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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HCN4_MOUSE
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLPPSMRK RLYSLPQQVG AKAWIMDEEE DGEEEGAGGR QDPSRRSIRL RPLPSPSPSV  60
   61 AAGCSESRGA ALGATESEGP GRSAGKSSTN GDCRRFRGSL ASLGSRGGGS GGAGGGSSLG 120
  121 HLHDSAEERR LIAAEGDASP GEDRTPPGLA TEPERPATAA QPAASPPPQQ PPQPASASCE 180
  181 QPSADTAIKV EGGAAAIDHI LPEAEVRLGQ SGFMQRQFGA MLQPGVNKFS LRMFGSQKAV 240
  241 EREQERVKSA GFWIIHPYSD FRFYWDLTML LLMVGNLIII PVGITFFKDE NTTPWIVFNV 300
  301 VSDTFFLIDL VLNFRTGIVV EDNTEIILDP QRIKMKYLKS WFVVDFISSI PVEYIFLIVE 360
  361 TRIDSEVYKT ARAVRIVRFT KILSLLRLLR LSRLIRYIHQ WEEIFHMTYD LASAVVRIVN 420
  421 LIGMMLLLCH WDGCLQFLVP MLQDFPHDCW VSINGMVNNS WGKQYSYALF KAMSHMLCIG 480
  481 YGRQAPVGMS DVWLTMLSMI VGATCYAMFI GHATALIQSL DSSRRQYQEK YKQVEQYMSF 540
  541 HKLPPDTRQR IHDYYEHRYQ GKMFDEESIL GELSEPLREE IINFNCRKLV ASMPLFANAD 600
  601 PNFVTSMLTK LRFEVFQPGD YIIREGTIGK KMYFIQHGVV SVLTKGNKET RLADGSYFGE 660
  661 ICLLTRGRRT ASVRADTYCR LYSLSVDNFN EVLEEYPMMR KKNSILLHKV QHDLNSGVFN 720
  721 YQENEIIQQI VRHDREMAHC AHRVQAAASA TPTPTPVIWT PLIQAPLQAA AATTSVAIAL 780
  781 THHPRLPAAI FRPPPGPGLG NLGAGQTPRH PRRLQSLIPS ALGSASPASS PSQVDTPSSS 840
  841 SFHIQQLAGF SAPPGLSPLL PSSSSSPPPG ACGSPPAPTP STSTAAAAST TGFGHFHKAL 900
  901 GGSLSSSDSP LLTPLQPGAR SPQAAQPPPP LPGARGGLGL LEHFLPPPPS SRSPSSSPGQ 960
  961 LGQPPGELSL GLAAGPSSTP ETPPRPERPS FMAGASGGAS PVAFTPRGGL SPPGHSPGPP1020
 1021 RTFPSAPPRA SGSHGSLLLP PASSPPPPQV PQRRGTPPLT PGRLTQDLKL ISASQPALPQ1080
 1081 DGAQTLRRAS PHSSGESVAA FSLYPRAGGG SGSSGGLGPP GRPYGAIPGQ HVTLPRKTSS1140
 1141 GSLPPPLSLF GARAASSGGP PLTTAAPQRE PGARSEPVRS KLPSNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle