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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LMA2_MOUSE, LAMA...
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAATAGILL LLLLGTLEGS QTQRRQSQAH QQRGLFPAVL NLASNALITT NATCGEKGPE  60
   61 MYCKLVEHVP GQPVRNPQCR ICNQNSSNPY QRHPITNAID GKNTWWQSPS IKNGVEYHYV 120
  121 TITLDLQQVF QIAYVIVKAA NSPRPGNWIL ERSLDDVEYK PWQYHAVTDT ECLTLYNIYP 180
  181 RTGPPSYAKD DEVICTSFYS KIHPLENGEI HISLINGRPS ADDPSPELLE FTSARYIRLR 240
  241 FQRIRTLNAD LMMFAHKDPR EIDPIVTRRY YYSVKDISVG GMCICYGHAR ACPLDPATNK 300
  301 SRCECEHNTC GESCDRCCPG FHQKPWRAGT FLTKSECEAC NCHGKAEECY YDETVASRNL 360
  361 SLNIHGKYIG GGVCINCTHN TAGINCETCV DGFFRPKGVS PNYPRPCQPC HCDPTGSLSE 420
  421 VCVKDEKYAQ RGLKPGSCHC KTGFGGVNCD RCVRGYHGYP DCQPCNCSGL GSTNEDPCVG 480
  481 PCSCKENVEG EDCSRCKSGF FNLQEDNQKG CEECFCSGVS NRCQSSYWTY GNIQDMRGWY 540
  541 LTDLSGRIRM APQLDNPDSP QQISISNSEA RKSLLDGYYW SAPPPYLGNR LPAVGGQLSF 600
  601 TISYDLEEEE DDTEKLLQLM IIFEGNDLRI STAYKEVYLE PSEEHVEEVS LKEEAFTIHG 660
  661 TNLPVTRKDF MIVLTNLGEI LIQITYNLGM DAIFRLSSVN LESPVPYPTD RRIATDVEVC 720
  721 QCPPGYSGSS CETCWPRHRR VNGTIFGGIC EPCQCFAHAE ACDDITGECL NCKDHTGGPY 780
  781 CNECLPGFYG DPTRGSPEDC QPCACPLNIP SNNFSPTCHL DRSLGLICDE CPIGYTGPRC 840
  841 ERCAEGYFGQ PSVPGGSCQP CQCNDNLDYS IPGSCDSLSG SCLICKPGTT GRYCELCADG 900
  901 YFGDAVNTKN CQPCRCDING SFSEDCHTRT GQCECRPNVQ GRHCDECKPE TFGLQLGRGC 960
  961 LPCNCNSFGS KSFDCEASGQ CWCQPGVAGK KCDRCAHGYF NFQEGGCIAC DCSHLGNNCD1020
 1021 PKTGQCICPP NTTGEKCSEC LPNTWGHSIV TGCKVCNCST VGSLASQCNV NTGQCSCHPK1080
 1081 FSGMKCSECS RGHWNYPLCT LCDCFLPGTD ATTCDLETRK CSCSDQTGQC SCKVNVEGVH1140
 1141 CDRCRPGKFG LDAKNPLGCS SCYCFGVTSQ CSEAKGLIRT WVTLSDEQTI LPLVDEALQH1200
 1201 TTTKGIAFQK PEIVAKMDEV RQELHLEPFY WKLPQQFEGK KLMAYGGKLK YAIYFEARDE1260
 1261 TGFATYKPQV IIRGGTPTHA RIITRHMAAP LIGQLTRHEI EMTEKEWKYY GDDPRISRTV1320
 1321 TREDFLDILY DIHYILIKAT YGNVVRQSRI SEISMEVAEP GHVLAGSPPA HLIERCDCPP1380
 1381 GYSGLSCETC APGFYRLRSE PGGRTPGPTL GTCVPCQCNG HSSQCDPETS VCQNCQHHTA1440
 1441 GDFCERCALG YYGIVRGLPN DCQPCACPLI SPSNNFSPSC VLEGLEDYRC TACPRGYEGQ1500
 1501 YCERCAPGYT GSPSSPGGSC QECECDPYGS LPVPCDRVTG LCTCRPGATG RKCDGCEHWH1560
 1561 AREGAECVFC GDECTGLLLG DLARLEQMTM NINLTGPLPA PYKILYGLEN TTQELKHLLS1620
 1621 PQRAPERLIQ LAEGNVNTLV METNELLTRA TKVTADGEQT GQDAERTNSR AESLEEFIKG1680
 1681 LVQDAEAINE KAVKLNETLG NQDKTAERNL EELQKEIDRM LKELRSKDLQ TQKEVAEDEL1740
 1741 VAAEGLLKRV NKLFGEPRAQ NEDMEKDLQQ KLAEYKNKLD DAWDLLREAT DKTRDANRLS1800
 1801 AANQKNMTIL ETKKEAIEGS KRQIENTLKE GNDILDEANQ LLGEINSVID YVDDIKTKLP1860
 1861 PMSEELSDKI DDLAQEIKDR RLAEKVFQAE SHAAQLNDSS AVLDGILDEA KNISFNATAA1920
 1921 FRAYSNIKDY IDEAEKVARE AKELAQGATK LATSPQGLLK EDAKGSLQKS FRILNEAKKL1980
 1981 ANDVKGNHND LNDLKTRLET ADLRNSGLLG ALNDTMDKLS AITNDTAAKL QAVKEKAREA2040
 2041 NDTAKAVLAQ VKDLHQNLDG LKQNYNKLAD SVAKTNAVVK DPSKNKIIAD AGTSVRNLEQ2100
 2101 EADRLIDKLK PIKELEDNLK KNISEIKELI NQARKQANSI KVSVSSGGDC VRTYRPEIKK2160
 2161 GSYNNIVVHV KTAVADNLLF YLGSAKFIDF LAIEMRKGKV SFLWIVGSGV GRVGFPDLTI2220
 2221 DDSYWYRIEA SRTGRNGSIS VRALDGPKAS MVPSTYHSVS PPGYTILDVD ANAMLFVGGL2280
 2281 TGKIKKADAV RVITFTGCMG ETYFDNKPIG LWNFREKEGD CKGCTVSPQV EDSEGTIQFD2340
 2341 GEGYALVSRP IRWYPNISTV MFKFRTFSSS ALLMYLATRD LKDFMSVELS DGHVKVSYDL2400
 2401 GSGMTSVVSN QNHNDGKWKA FTLSRIQKQA NISIVDIDSN QEENVATSSS GNNFGLDLKA2460
 2461 DDKIYFGGLP TLRNLSMKAR PEVNVKKYSG CLKDIEISRT PYNILSSPDY VGVTKGCSLE2520
 2521 NVNTVSFPKP GFVELAAVSI DVGTEINLSF STRNESGIIL LGSGGTLTPP RRKRRQTTQA2580
 2581 YYAIFLNKGR LEVHLSSGTR TMRKIVIKPE PNLFHDGREH SVHVERTRGI FTVQIDEDRR2640
 2641 HIQNLTEEQP IEVKKLFVGG APPEFQPSPL RNIPAFQGCV WNLVINSIPM DFAQPIAFKN2700
 2701 ADIGRCTYQK PREDESEAVP AEVIVQPQSV PTPAFPFPVP TMVHGPCVAE SEPALLTGSK2760
 2761 QFGLSRNSHI AIVFDDTKVK NRLTIELEVR TEAESGLLFY MGRINHADFG TVQLRNGFPF2820
 2821 FSYDLGSGST RTMIPTKIND GQWHKIKIVR VKQEGILYVD DASSQTISPK KADILDVGGI2880
 2881 LYVGGLPINY TTRRIGPVTY SLDGCVRNLH MEQAPVDLDQ PTSSFHVGTC FANAESGTYF2940
 2941 DGTGFGKAVG GFIVGLDLLV EFEFRTTRPT GVLLGISSQK MDGMGIEMID EKLMFHVDNG3000
 3001 AGRFTAIYDA EIPGHMCNGQ WYKVTAKKIK NRLELVVDGN QVDAQSPNSA STSADTNDPV3060
 3061 FVGGFPGGLN QFGLTTNIRF RGCIRSLKLT KGTANRWRLI LPRPWN

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