YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AA2A_MOUSE, AA2A...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSVYIMVE LAIAVLAILG NVLVCWAVWI NSNLQNVTNF FVVSLAAADI AVGVLAIPFA  60
   61 ITISTGFCAA CHGCLFIACF VLVLTQSSIF SLLAIAIDRY IAIRIPLRYN GLVTGMKAKG 120
  121 IIAICWVLSF AIGLTPMLGW NNCSQTDENS TKTCGEGRVT CLFEDVVPMN YMVYYNFFAF 180
  181 VLLPLLLMLA IYLRIFLAAR RQLKQMESQP LPGERTRSTL QKEVHAAKSL AIIVGLFALC 240
  241 WLPLHIINCF TFFCSTCQHA PPWLMYLAII LSHSNSVVNP FIYAYRIREF RQTFRKIIRT 300
  301 HVLRRQEPFR AGGSSAWALA AHSTEGEQVS LRLNGHPLGV WANGSAPHSG RRPNGYTLGP 360
  361 GGGGSTQGSP GDVELLTQEH QEGQEHPGLG DHLAQGRVGT ASWSSEFAPS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	30	0.91
Cytoplasmic	31	39	0.82
Transmembrane Helix	40	61	0.93
Non-Cytoplasmic	62	68	0.71
Transmembrane Helix	69	97	0.83
Cytoplasmic	98	117	0.84
Transmembrane Helix	118	138	0.88
Non-Cytoplasmic	139	176	0.93
Transmembrane Helix	177	196	0.96
Cytoplasmic	197	224	0.96
Transmembrane Helix	225	247	0.87
Non-Cytoplasmic	248	262	0.83
Transmembrane Helix	263	285	0.90
Cytoplasmic	286	410	0.88