YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VMAT2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	43	0.94
Non-Cytoplasmic	44	136	0.85
Transmembrane Helix	137	155	0.60
Cytoplasmic	156	164	0.57
Transmembrane Helix	165	188	0.85
Non-Cytoplasmic	189	193	0.59
Transmembrane Helix	194	214	0.85
Cytoplasmic	215	222	0.78
Transmembrane Helix	223	244	0.90
Non-Cytoplasmic	245	252	0.72
Transmembrane Helix	253	273	0.94
Cytoplasmic	274	293	0.85
Transmembrane Helix	294	314	0.92
Non-Cytoplasmic	315	332	0.80
Transmembrane Helix	333	353	0.93
Cytoplasmic	354	360	0.77
Transmembrane Helix	361	381	0.94
Non-Cytoplasmic	382	391	0.61
Transmembrane Helix	392	413	0.87
Cytoplasmic	414	420	0.75
Transmembrane Helix	421	440	0.89
Non-Cytoplasmic	441	451	0.64
Transmembrane Helix	452	473	0.93
Cytoplasmic	474	517	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSDLVLLR WLRDSRHSRK LILFIVFLAL LLDNMLLTVV VPIIPSYLYS IKHEKNTTEI  60
   61 QTARPALTAS TSESFHSIFS YYNNSTVFTG NATGGLPGGE SPKATTTQHT VTNTTVPPDC 120
  121 PSEDKDLLNE NVQVGLLFAS KATVQLLTNP FIGLLTNRIG YPIPMFAGFC IMFISTVMFA 180
  181 FSSSYAFLLI ARSLQGIGSS CSSVAGMGML ASVYTDDEER GNAMGIALGG LAMGVLVGPP 240
  241 FGSVLYEFVG KTAPFLVLAA LVLLDGAIQL FVLQPSRVQP ESQKGTPLTT LLKDPYILIA 300
  301 AGSICFANMG IAMLEPALPI WMMETMCSRK WQLGVAFLPA SISYLIGTNI FGILAHKMGR 360
  361 WLCALLGMIV VGISILCIPF AKNIYGLIAP NFGVGFAIGM VDSSMMPIMG YLVDLRHVSV 420
  421 YGSVYAIADV AFCMGYAIGP SAGGAIAKAI GFPWLMTIIG IIDIVFAPLC FFLRSPPAKE 480
  481 EKMAILMDHN CPIKTKMYTQ NNVQPYPVGD DEESESD