YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNN2_MOUSE, KCN...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSCRYNGGV MRPLSNLSSS RRNLQEMDSE AQPLQPPASV VGGGGGASSP SAAAAASSSA  60
   61 PEIVVSKPEH NNSNNLALYG TGGGGSTGGG GGGSGHGSSS GTKSSKKKNQ NIGYKLGHRR 120
  121 ALFEKRKRLS DYALIFGMFG IVVMVIETEL SWGAYDKASL YSLALKCLIS LSTIILLGLI 180
  181 IVYHAREIQL FMVDNGADDW RIAMTYERIF FICLEILVCA IHPIPGNYTF TWTARLAFSY 240
  241 APSTTTADVD IILSIPMFLR LYLIARVMLL HSKLFTDASS RSIGALNKIN FNTRFVMKTL 300
  301 MTICPGTVLL VFSISLWIIA AWTVRACERY HDQQDVTSNF LGAMWLISIT FLSIGYGDMV 360
  361 PNTYCGKGVC LLTGIMGAGC TALVVAVVAR KLELTKAEKH VHNFMMDTQL TKRVKNAAAN 420
  421 VLRETWLIYK NTKLVKKIDH AKVRKHQRKF LQAIHQLRSV KMEQRKLNDQ ANTLVDLAKT 480
  481 QNIMYDMISD LNERSEDFEK RIVTLETKLE TLIGSIHALP GLISQTIRQQ QRDFIETQME 540
  541 NYDKHVSYNA ERSRSSSRRR RSSSTAPPTS SESS

Type	Start	End	Confidence
Cytoplasmic	1	128	0.93
Transmembrane Helix	129	150	0.89
Non-Cytoplasmic	151	161	0.81
Transmembrane Helix	162	183	0.95
Cytoplasmic	184	204	0.93
Transmembrane Helix	205	226	0.86
Non-Cytoplasmic	227	245	0.82
Transmembrane Helix	246	264	0.70
Cytoplasmic	265	298	0.69
Transmembrane Helix	299	321	0.89
Non-Cytoplasmic	322	339	0.65
Transmembrane Helix	340	360	0.85
Cytoplasmic	361	367	0.61
Transmembrane Helix	368	389	0.92
Non-Cytoplasmic	390	574	0.71