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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20073079, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.58
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVRVRLSLL LLCAVLLGSA AATSDDKTNQ DDSLDSKSSL PTDESVKDHT TTGKVVAGQI  60
   61 FVDSEEAEVE SLLQDEEDSS KTQEEEISFL ESPNPSSKTY EELKRVRKPV LTAIEAEEDA 120
  121 AKRRQMQEAE MIYQAGMKIL NGSNRKSQKR EAYRYLQKAA GMNHTKALER VSYALLFGDY 180
  181 LTQNIQAAKE MFEKLTEEGS PKGQTGLGFL YASGLGVNSS QAKALVYYTF GALGGNLIAH 240
  241 MILGYRYWAG IGVLQSCESA LTHYRLVANH VASDISLTGG SVVQRIRLPD EVENPGMNSG 300
  301 MLEEDLIQYY QFLAEKGDVQ AQVGLGQLHL HGGRGVEQNH QRAFDYFNLA ANAGNSHAMA 360
  361 FLGKMYSEGS DIVPQSNETA LHYFKKAADM GNPVGQSGLG MAYLYGRGVQ VNYDLALKYF 420
  421 QKAAEQGWVD GQLQLGSMYY NGIGVKRDYK QALKYFNLAS QGGHILAFYN LAQMHASGTG 480
  481 VMRSCHTAVE LFKNVCERGR WSERLMTAYN SYKDEDYNAA VVQYLLLAEQ GYEVAQSNAA 540
  541 FILDQREATI VGENETYPRA LLHWNRAASQ GYTVARIKLG DYHFYGFGTD VDYETAFIHY 600
  601 RLASEQQHSA QAMFNLGYMH EKGLGIKQDI HLAKRFYDMA AEASPDAQVP VFLALCKLGV 660
  661 VYFLQYIREA NIRDLFTQLD MDQLLGPEWD LYLMTIIALL LGTVIAYRQR QHQDIPVPRP 720
  721 PGPRPAPPQQ EGPPEQQPPQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle