YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXG1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSFLTRLL EEIHNHSTFV GKIWLTVLIV FRIVLTAVGG ESIYYDEQSK FVCNTEQPGC  60
   61 ENVCYDAFAP LSHVRFWVFQ IILVATPSVM YLGYAIHKIA KMEHGEADKK AARSKPYAMR 120
  121 WKQHRALEET EEDHEEDPMM YPEMELESEK ENKEQSQPKP KHDGRRRIRE DGLMKIYVLQ 180
  181 LLARTVFEVG FLIGQYFLYG FQVHPFYVCS RLPCPHKIDC FISRPTEKTI FLLIMYGVTG 240
  241 LCLLLNIWEM LHLGFGTIRD SLNSKRRELD DPGAYNYPFT WNTPSAPPGY NIAVKPDQIQ 300
  301 YTELSNAKIA YKQNKANIAQ EQQYGSHEEH LPADLETLQR EIRMAQERLD LAIQAYHHQN 360
  361 NPHGPREKKA KVGSKSGSNK SSISSKSGDG KTSVWI

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	39	0.92
Non-Cytoplasmic	40	75	0.95
Transmembrane Helix	76	95	0.95
Cytoplasmic	96	175	0.98
Transmembrane Helix	176	198	0.83
Non-Cytoplasmic	199	230	0.86
Transmembrane Helix	231	252	0.87
Cytoplasmic	253	396	0.87