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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: UBE3C_MOUSE
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFEGDFKT RPKVSLGGAS RKEEKASLLH RTQEERRKRE EERRRLKNAV IIQSFIRGYR  60
   61 DRKQQYFIQR SAFDQCTDSA QPGGTFCLAD GPNLTLLVRQ LLFFYKQSED SKRLIWLYQN 120
  121 LIKHSSLFVK QLDGSERLTC LFQIKRLMSL CCRLLQNCSD DSLNVALPMR MLEVFTSENT 180
  181 YLPVLQDSSY VVSVIEQILH YMVHSGYYRS LYLLINSKLP SSIEYSDLSR VPIAKILLEN 240
  241 VLKPLHFTYS SCPEASRHQV FSAFTEEFLG APFTDQIFHF VIPAFADAQT VFPYEPFLNA 300
  301 LLLLESQSSK RCSGVPWLFY FVLTVGENYL GALSEDGLLV YLRVLQTFLS QLPASPTGTG 360
  361 CPDSTSDSED DNEETDQPNS PEDGRVSAPY ITEECLRKLD TKQQTNTLLN LVWRDSASEE 420
  421 VFTRMASICH TLMVQHRMMV PKVRLLYSLA FNARFLRHLW FLISSMTTQM ITGSMVPLLQ 480
  481 LISRGSPMSF EDSSRIIPLF YLFSSLFSHS LISIHDNEFF GDPIEVVGQR QSSMMPFTLE 540
  541 ELILLSRCLR DACLGIIKLA YPETKPEVRE EYVTAFQSIG VTTNSEMQQC IQMEQKRWVQ 600
  601 LFKVITNLVK MLKSRDTRRN FCPPNHWLSE QEDIKADKVT QLYVPASRHV WRFRRMGRIG 660
  661 PLQSTLEVGL ESLPLSVSEE RQLAILTELP FVVPFEERVK IFQRLIYADK QEVQGDGPFL 720
  721 DGINVTIRRN YIYEDAYDKL SPENEPDLKK RIRVHLLNAH GLDEAGIDGG GIFREFLNEL 780
  781 LKSGFNPNQG FFKTTNEGLL YPNPAAQMLV GDSFARHYYF LGRMLGKALY ENMLVELPFA 840
  841 GFFLSKLLGT SADVDIHHLA SLDPEVYRNL LFLKSYEEDV EELGLNFTVV NNDLGEAQVV 900
  901 ELKFGGKDIP VTGANRIAYI HLVADYRLNK QIRPHCLAFR QGLANVVSLE WLRMFDQQEI 960
  961 QVLISGAQVP VSLEDLKSFT NYSGGYSADH PVIKIFWRVV EGFTDEEKRK LLKFVTSCSR1020
 1021 PPLLGFKELY PAFCIHNGGS DLERLPTAST CMNLLKLPEF YDEALLRSKL LYAIECAAGF1080
 1081 ELS

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