YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187953103, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.97
Transmembrane Helix	96	118	0.86
Non-Cytoplasmic	119	136	0.82
Transmembrane Helix	137	154	0.95
Cytoplasmic	155	161	0.86
Transmembrane Helix	162	183	0.92
Non-Cytoplasmic	184	221	0.93
Transmembrane Helix	222	245	0.85
Cytoplasmic	246	252	0.82
Transmembrane Helix	253	273	0.92
Non-Cytoplasmic	274	306	0.93
Transmembrane Helix	307	329	0.93
Cytoplasmic	330	402	0.81
Transmembrane Helix	403	428	0.82
Non-Cytoplasmic	429	443	0.56
Transmembrane Helix	444	464	0.88
Cytoplasmic	465	570	0.63
Transmembrane Helix	571	593	0.84
Non-Cytoplasmic	594	608	0.50
Transmembrane Helix	609	635	0.60
Cytoplasmic	636	653	0.68
Transmembrane Helix	654	677	0.75
Non-Cytoplasmic	678	706	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHVRNKKSD DKKAMVVAKE DTNKSESEGV TKLQTYLKTI PIAKKKFAKL PKRKKSPTSA  60
   61 ELLLIDPRYS ASKEGPLGLG PIVLPFVQRF NNIDGFMTLY VAAVLIHGAL FAVVDMTLNI 120
  121 YQVQFSLTRT EWYLMDFSDY IASFVVAIII AHFGSKGNRT RWIAASCILM GLESMLFAFP 180
  181 FFTYEIIIPG RQSIELCMEE NEKRNIICGN SVPNRSKCIY FHIAGQCIHG IAGMPIYILG 240
  241 ITFIFDHIPT SSCGFYLAIG HSAYLIGYLL GMVGGLQNFQ PPPKEKTVEI EPAKVYQLLQ 300
  301 SGWWKTFLII AAISFCVSFM MVCFPTSLPG AHKLRLAKRK EPPTIDRRLK DMKIQPHLKG 360
  361 FLHNIWHILK NPLMLTQAIC KVSEYLTFNT SLYFLPHHLQ TQFLITPGIA SLLTGAFVLP 420
  421 GGIIGHFLGG LIVDRLEMTN KNKLKFTLVT TVVSVGLFLL IFFVECQTTT FAGINEDYDG 480
  481 YGQLGNLTAD CNEYCDCTTS LYTSICGRDE KEYFSPCFAG CKATKVSQTE KTYYNCSCIK 540
  541 EGLAASDDEG QFIDAIAGTC DSDCLKLPLF FAFYFSATVF SNMCSIPVIS IILQSVPANF 600
  601 TSLSLGVTYA IVKFVASVPA PLLFRLSSAI ACIYWDNNRC GGKERCWIYN KNILVYEFMG 660
  661 IWMSSQLIIV LLNIYAIQIH DVVVHGEITE SKTTVKDVKE QKERKA