YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FSHR_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.97
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	365	0.99
Transmembrane Helix	366	388	0.91
Cytoplasmic	389	397	0.88
Transmembrane Helix	398	420	0.89
Non-Cytoplasmic	421	442	0.87
Transmembrane Helix	443	464	0.89
Cytoplasmic	465	481	0.92
Transmembrane Helix	482	505	0.88
Non-Cytoplasmic	506	528	0.91
Transmembrane Helix	529	552	0.92
Cytoplasmic	553	572	0.93
Transmembrane Helix	573	594	0.92
Non-Cytoplasmic	595	607	0.81
Transmembrane Helix	608	628	0.81
Cytoplasmic	629	692	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLLVSLLA FLGSGSGCHH WLCHCSNRVF LCQDSKVTEI PPDLPRNAIE LRFVLTKLRV  60
   61 IPKGSFSGFG DLEKIEISQN DVLEVIEADV FSNLPNLHEI RIEKANNLLY INPEAFQNLP 120
  121 SLRYLLISNT GIKHLPAFHK IQSLQKVLLD IQDNINIHII ARNSFMGLSF ESVILWLNKN 180
  181 GIQEIHNCAF NGTQLDELNL SDNNNLEELP DDVFQGASGP VVLDISRTKV YSLPNHGLEN 240
  241 LKKLRARSTY RLKKLPSLDK FVMLIEASLT YPSHCCAFAN WRRQTSELHP ICNKSISRQD 300
  301 IDDMTQPGDQ RVSLVDDEPS YGKGSDMLYS EFDYDLCNEF VDVTCSPKPD AFNPCEDIMG 360
  361 YNILRVLIWF ISILAITGNT TVLVVLTTSQ YKLTVPRFLM CNLAFADLCI GIYLLLIASV 420
  421 DIHTKSQYHN YAIDWQTGAG CDAAGFFTVF ASELSVYTLA AITLERWHTI THAMQLECKV 480
  481 QLCHAASIMV LGWAFAFAAA LFPIFGISSY MKVSICLPMD IDSPLSQLYV MALLVLNALA 540
  541 FVVICGCYTH IYLTVRNPNI VSSSRDTKIA KRMATLIFTD FLCMAPILFF AISASLKVPL 600
  601 ITVSKAKILL VLFYPINSCA NPFLYAIFTK NFRRDFFVLM SKFGCYEVQA QIYKTETSSI 660
  661 THNFHSRKNP CSSAPRVTNS YVLVPLNHSV QN