YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPY5R_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVKLEEHFN KTFVTENNTA ASQNTASPAW EDYRGTENNT SAARNTAFPV WEDYRGSVDD  60
   61 LQYFLIGLYT FVSLLGFMGN LLILMAVMKK RNQKTTVNFL IGNLAFSDIL VVLFCSPFTL 120
  121 TSVLLDQWMF GKAMCHIMPF LQCVSVLVST LILISIAIVR YHMIKHPISN NLTANHGYFL 180
  181 IATVWTLGFA ICSPLPVFHS LVELKETFGS ALLSSKYLCV ESWPSDSYRI AFTISLLLVQ 240
  241 YILPLVCLTV SHTSVCRSIS CGLSHKENRL EENEMINLTL HPSKKSRDQA KPPSTQKWSY 300
  301 SFIRKHRRRY SKKTACVLPA PAGPSQEKHL TVPENPGSVR SQLSPSSKVI PGVPICFEVK 360
  361 PEESSDAQEM RVKRSLTRIK KRSRSVFYRL TILILVFAVS WMPLHVFHVV TDFNDNLISN 420
  421 RHFKLVYCIC HLLGMMSCCL NPILYGFLNN GIKADLRALI HCLHMS

Type	Start	End	Confidence
Non-Cytoplasmic	1	64	0.97
Transmembrane Helix	65	87	0.91
Cytoplasmic	88	98	0.87
Transmembrane Helix	99	121	0.89
Non-Cytoplasmic	122	137	0.82
Transmembrane Helix	138	159	0.92
Cytoplasmic	160	176	0.81
Transmembrane Helix	177	198	0.90
Non-Cytoplasmic	199	229	0.94
Transmembrane Helix	230	250	0.88
Cytoplasmic	251	385	0.98
Transmembrane Helix	386	407	0.93
Non-Cytoplasmic	408	424	0.92
Transmembrane Helix	425	448	0.88
Cytoplasmic	449	466	0.94