YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26341844
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSPGTSGSAN DSQHDPGKMF IGGLSWQTSP DSLRDYFSKF GEIRECMVMR DPTTKRSRGF  60
   61 GFVTFADPAS VDKVLGQPHH ELDSKTIDPK VAFPRRAQPK MVTRTKKIFV GGLSANTVVE 120
  121 DVKQYFEQFG KVEDAMLMFD KTTNRHRGFG FVTFENEDVV EKVCEIHFHE INNKMVECKK 180
  181 AQPKEVMFPP GTRGRARGLP YTMDAFMLGM GMLGYPNFVA TYGRGYPGFA PSYGYQFPGF 240
  241 PAAAYGPVAA AAVAAARGSG RKVYGAGGSQ ACLVCRGR

Type	Start	End	Confidence
Cytoplasmic	1	200	0.97
Transmembrane Helix	201	220	0.89
Non-Cytoplasmic	221	236	0.85
Transmembrane Helix	237	258	0.84
Cytoplasmic	259	278	0.92