YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FOXH1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGWDLAST YTPTTPSPQL ALAPAQGYLP CMGPRDNSQL RPPEAESLSK TPKRRKKRYL  60
   61 RHDKPPYTYL AMIALVIQAA PFRRLKLAQI IRQVQAVFPF FRDDYEGWKD SIRHNLSSNR 120
  121 CFHKVPKDPA KPQAKGNFWA VDVSLIPAEA LRLQNTALCR RWQNRGTHRA FAKDLSPYVL 180
  181 HGQPYQPPSP PPPPREGFSI KSLLGDPGKE STWPQHPGLP GQSTAAQAGT LSKGEEGMGT 240
  241 GPSSSSETPL WPLCSLPGPT IIEGESSQGE VIRPSPVTPD QGSWPLHLLE DSADSRGVPR 300
  301 RGSRASLWGQ LPTSYLPIYT PNVVMPLATL PTTSCPQCPS SASPAYWSVG TESQGSQDLL 360
  361 CDLDSLFQGV PPNKSIYDVW VSHPRDLAAP APGWLLSWYS M

Type	Start	End	Confidence
Cytoplasmic	1	64	0.52
Transmembrane Helix	65	82	0.51
Non-Cytoplasmic	83	401	0.99