YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCR6_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTESYFGT DDYDNTEYYS IPPDHGPCSL EEVRNFTKVF VPIAYSLICV FGLLGNIMVV  60
   61 MTFAFYKKAR SMTDVYLLNM AITDILFVLT LPFWAVTHAT NTWVFSDALC KLMKGTYAVN 120
  121 FNCGMLLLAC ISMDRYIAIV QATKSFRVRS RTLTHSKVIC VAVWFISIII SSPTFIFNKK 180
  181 YELQDRDVCE PRYRSVSEPI TWKLLGMGLE LFFGFFTPLL FMVFCYLFII KTLVQAQNSK 240
  241 RHRAIRVVIA VVLVFLACQI PHNMVLLVTA VNTGKVGRSC STEKVLAYTR NVAEVLAFLH 300
  301 CCLNPVLYAF IGQKFRNYFM KIMKDVWCMR RKNKMPGFLC ARVYSESYIS RQTSETVEND 360
  361 NASSFTM

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.97
Transmembrane Helix	43	66	0.92
Cytoplasmic	67	74	0.95
Transmembrane Helix	75	96	0.94
Non-Cytoplasmic	97	116	0.88
Transmembrane Helix	117	138	0.90
Cytoplasmic	139	152	0.95
Transmembrane Helix	153	177	0.83
Non-Cytoplasmic	178	210	0.95
Transmembrane Helix	211	230	0.95
Cytoplasmic	231	243	0.84
Transmembrane Helix	244	265	0.88
Non-Cytoplasmic	266	295	0.89
Transmembrane Helix	296	312	0.87
Cytoplasmic	313	367	0.86