YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSR5_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLSLASTP SWNASAASSG SHNWSLVDPV SPMGARAVLV PVLYLLVCTV GLGGNTLVIY  60
   61 VVLRYAKMKT VTNVYILNLA VADVLFMLGL PFLATQNAVS YWPFGSFLCR LVMTLDGINQ 120
  121 FTSIFCLMVM SVDRYLAVVH PLRSARWRRP RVAKLASAAV WVFSLLMSLP LLVFADVQEG 180
  181 WGTCNLSWPE PVGLWGAAFI TYTSVLGFFG PLLVICLCYL LIVVKVKAAG MRVGSSRRRR 240
  241 SERKVTRMVV VVVLVFVGCW LPFFIVNIVN LAFTLPEEPT SAGLYFFVVV LSYANSCANP 300
  301 LLYGFLSDNF RQSFRKALCL RRGYGVEDAD AIEPRPDKSG RPQTTLPTRS CEANGLMQTS 360
  361 RL

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.77
Transmembrane Helix	40	63	0.90
Cytoplasmic	64	73	0.87
Transmembrane Helix	74	95	0.93
Non-Cytoplasmic	96	116	0.85
Transmembrane Helix	117	137	0.86
Cytoplasmic	138	154	0.86
Transmembrane Helix	155	175	0.91
Non-Cytoplasmic	176	197	0.90
Transmembrane Helix	198	224	0.90
Cytoplasmic	225	244	0.95
Transmembrane Helix	245	266	0.94
Non-Cytoplasmic	267	282	0.87
Transmembrane Helix	283	306	0.91
Cytoplasmic	307	362	0.98