YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO2A1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.90
Transmembrane Helix	31	51	0.82
Non-Cytoplasmic	52	70	0.86
Transmembrane Helix	71	92	0.86
Cytoplasmic	93	99	0.90
Transmembrane Helix	100	121	0.92
Non-Cytoplasmic	122	172	0.95
Transmembrane Helix	173	195	0.85
Cytoplasmic	196	205	0.88
Transmembrane Helix	206	226	0.93
Non-Cytoplasmic	227	255	0.90
Transmembrane Helix	256	278	0.95
Cytoplasmic	279	320	0.97
Transmembrane Helix	321	344	0.88
Non-Cytoplasmic	345	364	0.82
Transmembrane Helix	365	385	0.92
Cytoplasmic	386	398	0.82
Transmembrane Helix	399	424	0.82
Non-Cytoplasmic	425	512	0.97
Transmembrane Helix	513	536	0.84
Cytoplasmic	537	555	0.74
Transmembrane Helix	556	575	0.81
Non-Cytoplasmic	576	604	0.93
Transmembrane Helix	605	625	0.84
Cytoplasmic	626	643	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLPKPGAR QGSGTSSVPA RRCSRSVFNN IKVFVLCHGL LQLCQLLYSA YFKSSLTTIE  60
   61 KRFGLSSSSS GLISSLNEIS NAILIIFVSY FGSRVNRPRM IGIGGLLLAA GAFVLTLPHF 120
  121 LSEPYQYAST TAGNSSHFQT DLCQKHLPGL LPSKCHSTVP DTQKETSSMW SLMVVAQLLA 180
  181 GVGTVPIQPF GISYVDDFAE PTNSPLYISI LFAIAVFGPA FGYLLGSVML RIFVDYGRVD 240
  241 TATVNLSPGD PRWIGAWWLG LLISSGFLIV TSLPFFFFPR AMSRGAERSV IAEETMKMEE 300
  301 DKSRGSLMDF IKRFPRIFLR LLMNPLFMLV VLSQCTFSSV IAGLSTFLNK FLEKQYDASA 360
  361 AYANLLIGAV NLPAAALGML FGGILMKRFV FPLQTIPRVA ATIMTISIIL CAPLFFMGCS 420
  421 TPAVAEVYPP STPSSIHPQP PACRRDCLCP DSVFHPVCGD NGVEYLSPCH AGCSSLNVSS 480
  481 AASKQPIYLN CSCVTGGSAS AKTGSCPTSC AQLLLPSIFL ISFVALIACV SHNPLYMMVL 540
  541 RVVNQDEKSF AIGVQFLLMR LLAWLPSPSL YGLLIDSSCI RWNYLCSGRR GACAYYDNDA 600
  601 LRNRYLGLQV IYKVLGTLLL FFISWRVKKN REYSLQENAS GLI