YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM9S2_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	35	0.99
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	299	0.99
Transmembrane Helix	300	322	0.91
Cytoplasmic	323	363	0.95
Transmembrane Helix	364	387	0.91
Non-Cytoplasmic	388	395	0.79
Transmembrane Helix	396	418	0.91
Cytoplasmic	419	432	0.86
Transmembrane Helix	433	455	0.89
Non-Cytoplasmic	456	467	0.77
Transmembrane Helix	468	492	0.86
Cytoplasmic	493	519	0.95
Transmembrane Helix	520	541	0.90
Non-Cytoplasmic	542	554	0.76
Transmembrane Helix	555	578	0.91
Cytoplasmic	579	588	0.82
Transmembrane Helix	589	611	0.88
Non-Cytoplasmic	612	627	0.89
Transmembrane Helix	628	652	0.89
Cytoplasmic	653	662	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRPPASPP AQGSRLLLLS LLLLGTVPGP RPGSAFYLPG LAPVNFCAEE KSNECKADIE  60
   61 LFVNRLDSVE SVLPYEYTAF DFCQASEGKR PSENLGQVLF GERIEPSPYK FTFNKKETCK 120
  121 LVCTKTYNTE KAEDKQKLDF LKKSMLLNYQ HHWIVDNMPV TWCYEVEDSQ KFCNPGFPIG 180
  181 CYITDKGHAK DACVISSEFH ERDTFYIFNH VDIKIYYHVV ETGSMGARLV AAKLEPKSFK 240
  241 HTHIDKPDCS GPAMDISNKA SGEIKIAYTY SISFEEEKNI RWASRWDYIL ESMPHTHIQW 300
  301 FSIMNSLVIV LFLSGMVAMI MLRTLHKDIA RYNQMDSTED AQEEFGWKLV HGDIFRPPRK 360
  361 GMLLSVFLGS GTQILIMTFV TLFFACLGFL SPANRGALMT CAVVLWVLLG TPAGYVAARF 420
  421 YKSFGGEKWK TNVLLTSFLC PGIVFADFFI MNLILWGEGS SAAIPFGTLV AILALWFCIS 480
  481 VPLTFIGAYF GFKKNAIEHP VRTNQIPRQI PEQSFYTKPL PGIIMGGILP FGCIFIQLFF 540
  541 ILNSIWSHQM YYMFGFLFLV FIILVITCSE ATILLCYFHL CAEDYHWQWR SFLTSGFTAV 600
  601 YFLIYAIHYF FSKLQITGTA STILYFGYTM IMVLIFFLFT GTIGFFACFW FVTKIYSVVK 660
  661 VD