YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCRL2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNYTVAPDD EYDVLILDDY LDNSGPDQVP APEFLSPQQV LQFCCAVFAV GLLDNVLAVF  60
   61 ILVKYKGLKN LGNIYFLNLA LSNLCFLLPL PFWAHTAAHG ESPGNGTCKV LVGLHSSGLY 120
  121 SEVFSNILLL VQGYRVFSQG RLASIFTTVS CGIVACILAW AMATALSLPE SVFYEPRMER 180
  181 QKHKCAFGKP HFLPIEAPLW KYVLTSKMII LVLAFPLLVF IICCRQLRRR QSFRERQYDL 240
  241 HKPALVITGV FLLMWAPYNT VLFLSAFQEH LSLQDEKSSY HLDASVQVTQ LVATTHCCVN 300
  301 PLLYLLLDRK AFMRYLRSLF PRCNDIPYQS SGGYQQAPPR EGHGRPIELY SNLHQRQDII 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.87
Transmembrane Helix	40	63	0.83
Cytoplasmic	64	73	0.84
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	110	0.89
Transmembrane Helix	111	134	0.80
Cytoplasmic	135	142	0.82
Transmembrane Helix	143	164	0.93
Non-Cytoplasmic	165	202	0.95
Transmembrane Helix	203	224	0.92
Cytoplasmic	225	243	0.88
Transmembrane Helix	244	264	0.90
Non-Cytoplasmic	265	287	0.91
Transmembrane Helix	288	307	0.64
Cytoplasmic	308	360	0.67