YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CKD6_MOUSE, CCBP...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTVASPLPL TTVGSENSSS IYDYDYLDDM TILVCRKDEV LSFGRVFLPV VYSLIFVLGL  60
   61 AGNLLLLVVL LHSAPRRRTM ELYLLNLAVS NLLFVVTMPF WAISVAWHWV FGSFLCKVIS 120
  121 TLYSINFYCG IFFITCMSLD KYLEIVHAQP LHRPKAQFRN LLLIVMVWIT SLAISVPEMV 180
  181 FVQIHQTLDG VWHCYADFGG HATIWKLYLR FQLNLLGFLL PLLAMIFFYS RIGCVLVRLR 240
  241 PPGQGRALRM AAALVIVFFM LWFPYYLTLF LHSLLDLHVF GNCEISHRLD YTLQVTESLA 300
  301 FSHCCFTPVL YAFCSHRFRR YLKAFLSVML RWHQAPGTPS SNHSESSRVT AQEDVVSMND 360
  361 LGERQSEDSL NKGEMGNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.98
Transmembrane Helix	50	71	0.94
Cytoplasmic	72	81	0.87
Transmembrane Helix	82	103	0.90
Non-Cytoplasmic	104	118	0.70
Transmembrane Helix	119	139	0.89
Cytoplasmic	140	159	0.88
Transmembrane Helix	160	182	0.89
Non-Cytoplasmic	183	210	0.93
Transmembrane Helix	211	233	0.85
Cytoplasmic	234	246	0.87
Transmembrane Helix	247	269	0.87
Non-Cytoplasmic	270	298	0.89
Transmembrane Helix	299	315	0.87
Cytoplasmic	316	378	0.86