YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTCP_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.95
Transmembrane Helix	22	44	0.88
Cytoplasmic	45	59	0.82
Transmembrane Helix	60	80	0.91
Non-Cytoplasmic	81	89	0.67
Transmembrane Helix	90	110	0.92
Cytoplasmic	111	117	0.89
Transmembrane Helix	118	141	0.90
Non-Cytoplasmic	142	157	0.87
Transmembrane Helix	158	176	0.97
Cytoplasmic	177	185	0.89
Transmembrane Helix	186	208	0.87
Non-Cytoplasmic	209	221	0.72
Transmembrane Helix	222	244	0.87
Cytoplasmic	245	257	0.84
Transmembrane Helix	258	279	0.80
Non-Cytoplasmic	280	286	0.61
Transmembrane Helix	287	308	0.88
Cytoplasmic	309	362	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAHNVSAPF NFSLPPGFGH RATDTALSVI LVVMLLLIML SLGCTMEFSK IKAHFWKPKG  60
   61 VIIAIVAQYG IMPLSAFLLG KVFHLTSIEA LAILICGCSP GGNLSNLFTL AMKGDMNLSI 120
  121 VMTTCSSFTA LGMMPLLLYI YSKGIYDGDL KDKVPYKGIM LSLVMVLIPC AIGIFLKSKR 180
  181 PHYVPYVLKA GMIITFSLSV AVTVLSVINV GNSIMFVMTP HLLATSSLMP FTGFLMGYIL 240
  241 SALFRLNPSC RRTISMETGF QNVQLCSTIL NVTFPPEVIG PLFFFPLLYM IFQLAEGLLF 300
  301 IIIFRCYLKI KPQKDQTKIT YKAAATEDAT PAALEKGTHN GNNPPTQPGL SPNGLNSGQM 360
  361 AN