YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HAS3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVQLTTALR VVGTSLFALV VLGGILAAYV TGYQFIHTEK HYLSFGLYGA ILGLHLLIQS  60
   61 LFAFLEHRRM RRAGRPLKLH CSQRSRSVAL CIAAYQEDPE YLRKCLRSAQ RIAFPNLKVV 120
  121 MVVDGNRQED TYMLDIFHEV LGGTEQAGFF VWRSNFHEAG EGETEASLQE GMERVRAVVW 180
  181 ASTFSCIMQK WGGKREVMYT AFKALGNSVD YIQVCDSDTV LDPACTIEML RVLEEDPQVG 240
  241 GVGGDVQILN KYDSWISFLS SVRYWMAFNV ERACQSYFGC VQCISGPLGM YRNSLLQQFL 300
  301 EDWYHQKFLG SKCSFGDDRH LTNRVLSLGY RTKYTARSKC LTETPTRYLR WLNQQTRWSK 360
  361 SYFREWLYNS LWFHKHHLWM TYESVVTGFF PFFLIATVIQ LFYRGRIWNI LLFLLTVQLV 420
  421 GIIKATYACF LRGNAEMIFM SLYSLLYMSS LLPAKIFAIA TINKSGWGTS GRKTIVVNFI 480
  481 GLIPVSIWVA VLLGGLAYTA YCQDLFSETE LAFLVSGAIL YGCYWVALLM LYLAIIARRC 540
  541 GKKPEQYSLA FAEV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.84
Transmembrane Helix	11	31	0.91
Non-Cytoplasmic	32	43	0.78
Transmembrane Helix	44	65	0.93
Cytoplasmic	66	272	0.96
Transmembrane Helix	273	291	0.63
Non-Cytoplasmic	292	378	0.70
Transmembrane Helix	379	402	0.82
Cytoplasmic	403	407	0.69
Transmembrane Helix	408	428	0.85
Non-Cytoplasmic	429	438	0.68
Transmembrane Helix	439	459	0.83
Cytoplasmic	460	474	0.83
Transmembrane Helix	475	498	0.90
Non-Cytoplasmic	499	511	0.83
Transmembrane Helix	512	536	0.87
Cytoplasmic	537	554	0.95