YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WFS1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	315	0.79
Transmembrane Helix	316	335	0.73
Non-Cytoplasmic	336	341	0.55
Transmembrane Helix	342	367	0.79
Cytoplasmic	368	406	0.77
Transmembrane Helix	407	425	0.83
Non-Cytoplasmic	426	430	0.57
Transmembrane Helix	431	450	0.72
Cytoplasmic	451	459	0.70
Transmembrane Helix	460	478	0.83
Non-Cytoplasmic	479	494	0.76
Transmembrane Helix	495	518	0.88
Cytoplasmic	519	529	0.81
Transmembrane Helix	530	551	0.88
Non-Cytoplasmic	552	562	0.65
Transmembrane Helix	563	585	0.90
Cytoplasmic	586	595	0.66
Transmembrane Helix	596	616	0.90
Non-Cytoplasmic	617	633	0.79
Transmembrane Helix	634	654	0.93
Cytoplasmic	655	890	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSGTPPPSP SGPPPPPAPQ PQARARLNAT ASLEQDKIEP PRAPRPQADP SAGRSAGEAA  60
   61 APEPRAPQTG SREETDRAGP MKADVEIPFE EVLEKAKAGD PKAQTEVGKH YLRLANDADE 120
  121 ELNSCSAVAW LILAAKQGRR EAVKLLRRCL ADRKGITSEN EAEVKQLSSE TDLERAVRKA 180
  181 ALVMYWKLNP KKKKQVAVSE LLENVGQVNE QDGGAQPGPV PKSLQKQRRM LERLVSSESK 240
  241 NYIALDDFVE LTKKYAKGII PTNLFLQDED EDEDELAGKS PEDLPLRQKV VKYPLHAIME 300
  301 IKEYLIDVAS KAGMHWLSTI VPTHHINALI FFFIISNLTI DFFAFFIPLV VFYLSFVSMV 360
  361 ICTLKVFQDS KAWENFRTLT DLLLRFEPNL DVEQAEVNFG WNHLEPYIHF LLSVVFVIFS 420
  421 FPLASKDCIP CSELAVISTF FTVTSYMSLS SSAEPYTRRA LVTEVAAGLL SLLPTVPVDW 480
  481 RFLKVLGQTF FTVPVGHFII LNVSLPCLLY VYLFYLFFRM AQLRNFKGTY CYLVPYLVCF 540
  541 MWCELSVVIL LQSTGLGLVR ASIGYFLFLF ALPILVAGLA LMGTVQFARW FLSLDLTKIM 600
  601 VTTVICGVPL LFRWWTKANF SVMGMVKSLT KSSMVKLILV WLTAILLFCW FYVYRSEGMK 660
  661 VYNSTLTWQQ YGFLCGPRAW KETNMARTQI LCSHLEGHRV TWTGRFKYVR VTEIDNSAES 720
  721 AINMLPFFLG DWMRCLYGEA YPSCSSGNTS TAEEELCRLK QLAKHPCHIK KFDRYKFEIT 780
  781 VGMPFGTNGN RGHEEDDITK DIVLRASSEF KDVLLNLRQG SLIEFSTILE GRLGSKWPVF 840
  841 ELKAISCLNC MTQLSPARRH VKIEQDWRST VHGALKFAFD FFFFPFLSAA