YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCMC1_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRWLRAFVL PTAACHDAEP PTRYETLFRA LDRNGDGVVD IGELQQGLQS LGIPLGQDAE  60
   61 EKIFTTGDVN KDGKLDFEEF MKYLKDHEKK MKLAFKSLDK NNDGKIEPSE IVQSLQMLGL 120
  121 HISEKQAELI LQSIDSDGTM TVDWNEWRDY FLFNPVTDIE EIIRFWKHST GIDIGDSLTI 180
  181 PDEFTEDEKK SGQWWRQLLA GGVAGAVSRT STAPLDRLKV MMQVHGSKSM NIFGGFRQMV 240
  241 KEGGIRSLWR GNGTNVIKIA PETAVKFWAY EQYKKLLTEE GQKLGTFERF ISGSMAGATA 300
  301 QTFIYPMEVL KTRLAVAKTG QYSGIYGCAK KILKHEGFGA FYKGYIPNLL GIIPYAGIDL 360
  361 AVYELLKSYW LDNFAKDSVN PGVMVLLSCG ALSSTCGQLA SYPLALVRTR MQAQATVEGA 420
  421 PQLSMVGLFQ RIVSKEGVSG LYRGITPNFM KVLPAVGISY VVYENMKQTL GVAQK

Type	Start	End	Confidence
Signal Peptide	1	15	0.71
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	475	0.90