YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRPA1_MOUSE
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGLRRILL PEERKEVQGV VYRGVGEDMD CSKESFKVDI EGDMCRLEDF IKNRRKLSKY  60
   61 EDENLCPLHH AAAEGQVELM ELIINGSSCE VLNIMDGYGN TPLHCAAEKN QVESVKFLLS 120
  121 QGANPNLRNR NMMSPLHIAV HGMYNEVIKV LTEHKATNIN LEGENGNTAL MSTCAKDNSE 180
  181 ALQILLEKGA KLCKSNKWGD YPVHQAAFSG AKKCMELILA YGEKNGYSRE THINFVNHKK 240
  241 ASPLHLAVQS GDLDMIKMCL DNGAHIDMME NAKCMALHFA ATQGATDIVK LMISSYTGSS 300
  301 DIVNAVDGNQ ETLLHRASLF DHHDLAEYLI SVGADINSTD SEGRSPLILA TASASWNIVN 360
  361 LLLCKGAKVD IKDHLGRNFL HLTVQQPYGL RNLRPEFMQM QHIKELVMDE DNDGCTPLHY 420
  421 ACRQGVPVSV NNLLGFNVSI HSKSKDKKSP LHFAASYGRI NTCQRLLQDI SDTRLLNEGD 480
  481 LHGMTPLHLA AKNGHDKVVQ LLLKKGALFL SDHNGWTALH HASMGGYTQT MKVILDTNLK 540
  541 CTDRLDEEGN TALHFAAREG HAKAVAMLLS YNADILLNKK QASFLHIALH NKRKEVVLTT 600
  601 IRNKRWDECL QVFTHNSPSN RCPIMEMVEY LPECMKVLLD FCMIPSTEDK SCQDYHIEYN 660
  661 FKYLQCPLSM TKKVAPTQDV VYEPLTILNV MVQHNRIELL NHPVCREYLL MKWCAYGFRA 720
  721 HMMNLGSYCL GLIPMTLLVV KIQPGMAFNS TGIINGTSST HEERIDTLNS FPIKICMILV 780
  781 FLSSIFGYCK EVIQIFQQKR NYFLDYNNAL EWVIYTTSII FVLPLFLNIP AYMQWQCGAI 840
  841 AIFFYWMNFL LYLQRFENCG IFIVMLEVIF KTLLRSTGVF IFLLLAFGLS FYVLLNFQDA 900
  901 FSTPLLSLIQ TFSMMLGDIN YRDAFLEPLF RNELAYPVLT FGQLIAFTMF VPIVLMNLLI 960
  961 GLAVGDIAEV QKHASLKRIA MQVELHTNLE KKLPLWYLRK VDQRSTIVYP NRPRHGRMLR1020
 1021 FFHYFLNMQE TRQEVPNIDT CLEMEILKQK YRLKDLTSLL EKQHELIKLI IQKMEIISET1080
 1081 EDEDNHCSFQ DRFKKERLEQ MHSKWNFVLN AVKTKTHCSI SHPDF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle