YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IFR1_MOUSE, IFRD...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNKKRNAP HRGGGGGGGS GAATSAATAG GPHRTVQPFS DEHASIETMS HCSGYSDPSS  60
   61 FAEDGPEVLD EEGTQEDLEY KLKGLIDLTL DKSAKTRQAA LEGVKNALSS KVLYEFVLER 120
  121 RMTLTDSIER CLKKGKSDEQ RAAAAVASVL CIQLGPGFES EEILKTLGPI LKKIICDGAA 180
  181 SIQARQTCAT CFGVCCFIAT DDITELYSTL ECFENIFTKS YLKEKDTNVT CSTPNTVLHI 240
  241 SSLLAWTLLL TICPINEVKK KLELHFHKLP SLLSCDDVNM RIAAGESLAL LFELARGMES 300
  301 DFFYEDMDSL TQMLRALATD GNKHRAKVDK RKQRSVFRDV LRAVEERDFP TETVKFGPER 360
  361 MYIDSWVKKH TYDTFKEVLG SGMQYHLQTN EFLRNVFELG PPVMLDAATL KTMKISRFER 420
  421 HLYNSAAFKA RTKARSKCRD KRADVGEFL

Type	Start	End	Confidence
Signal Peptide	1	29	0.65
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	449	0.98