YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCR8_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYTMEPNVT MTDYYPDFFT APCDAEFLLR GSMLYLAILY CVLFVLGLLG NSLVILVLVG  60
   61 CKKLRSITDI YLLNLAASDL LFVLSIPFQT HNLLDQWVFG TAMCKVVSGL YYIGFFSSMF 120
  121 FITLMSVDRY LAIVHAVYAI KVRTASVGTA LSLTVWLAAV TATIPLMVFY QVASEDGMLQ 180
  181 CFQFYEEQSL RWKLFTHFEI NALGLLLPFA ILLFCYVRIL QQLRGCLNHN RTRAIKLVLT 240
  241 VVIVSLLFWV PFNVALFLTS LHDLHILDGC ATRQRLALAI HVTEVISFTH CCVNPVIYAF 300
  301 IGEKFKKHLM DVFQKSCSHI FLYLGRQMPV GALERQLSSN QRSSHSSTLD DIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.96
Transmembrane Helix	36	59	0.94
Cytoplasmic	60	69	0.85
Transmembrane Helix	70	90	0.93
Non-Cytoplasmic	91	108	0.85
Transmembrane Helix	109	131	0.84
Cytoplasmic	132	146	0.83
Transmembrane Helix	147	169	0.86
Non-Cytoplasmic	170	199	0.89
Transmembrane Helix	200	220	0.91
Cytoplasmic	221	236	0.90
Transmembrane Helix	237	258	0.91
Non-Cytoplasmic	259	279	0.90
Transmembrane Helix	280	301	0.66
Cytoplasmic	302	353	0.69