YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GASR_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLKLNRSL QGPGPGSGSS LCRPGVSLLN SSSAGNLSCE TPRIRGTGTR ELELTIRITL  60
   61 YAVIFLMSVG GNVLIIVVLG LSRRLRTVTN AFLLSLAVSD LLLAVACMPF TLLPNLMGTF 120
  121 IFGTVICKAV SYLMGVSVSV STLNLAAIAL ERYSAICRPL QARVWQTRSH AARVILATWL 180
  181 LSGLLMVPYP VYTVVQPVGP RILQCMHLWP SERVQQMWSV LLLILLFFIP GVVMAVAYGL 240
  241 ISRELYLGLR FDGDNDSETQ SRVRNQGGLP GGAAAPGPVH QNGGCRHVTS LTGEDSDGCY 300
  301 VQLPRSRLEM TTLTTPTTGP GPGPRPNQAK LLAKKRVVRM LLVIVLLFFV CWLPVYSANT 360
  361 WRAFDGPGAR RALAGAPISF IHLLSYTSAC ANPLVYCFMH RRFRQACLDT CARCCPRPPR 420
  421 ARPRPLPDED PPTPSIASLS RLSYTTISTL GPG

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.89
Transmembrane Helix	58	81	0.90
Cytoplasmic	82	90	0.84
Transmembrane Helix	91	113	0.90
Non-Cytoplasmic	114	128	0.75
Transmembrane Helix	129	150	0.88
Cytoplasmic	151	170	0.91
Transmembrane Helix	171	192	0.91
Non-Cytoplasmic	193	217	0.94
Transmembrane Helix	218	241	0.93
Cytoplasmic	242	336	0.99
Transmembrane Helix	337	358	0.91
Non-Cytoplasmic	359	377	0.84
Transmembrane Helix	378	398	0.91
Cytoplasmic	399	453	0.98