YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GALR1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELAMVNLSE GNGSDPEPPA PESRPLFGIG VENFITLVVF GLIFAMGVLG NSLVITVLAR  60
   61 SKPGKPRSTT NLFILNLSIA DLAYLLFCIP FQATVYALPT WVLGAFICKF IHYFFTVSML 120
  121 VSIFTLAAMS VDRYVAIVHS RRSSSLRVSR NALLGVGFIW ALSIAMASPV AYHQRLFHRD 180
  181 SNQTFCWEQW PNKLHKKAYV VCTFVFGYLL PLLLICFCYA KVLNHLHKKL KNMSKKSEAS 240
  241 KKKTAQTVLV VVVVFGISWL PHHVVHLWAE FGAFPLTPAS FFFRITAHCL AYSNSSVNPI 300
  301 IYAFLSENFR KAYKQVFKCH VCDESPRSET KENKSRMDTP PSTNCTHV

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.97
Transmembrane Helix	35	58	0.91
Cytoplasmic	59	71	0.90
Transmembrane Helix	72	94	0.88
Non-Cytoplasmic	95	109	0.82
Transmembrane Helix	110	131	0.91
Cytoplasmic	132	150	0.86
Transmembrane Helix	151	172	0.90
Non-Cytoplasmic	173	199	0.95
Transmembrane Helix	200	223	0.90
Cytoplasmic	224	243	0.95
Transmembrane Helix	244	265	0.91
Non-Cytoplasmic	266	280	0.76
Transmembrane Helix	281	305	0.68
Cytoplasmic	306	348	0.94