YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HS3SA_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSGPTGAQ PSPAEPLSRS IFRKFLLMLC SLLTSLYVFY CLAERCPPGS GPVAGVPGRG  60
   61 VPAGPRELAM WPAGAPRKRL LQLRQRRRRG RSGPGDSSDQ EEQSPGLAAA PGGSGAGSSV 120
  121 AEAQPGTLAL LLDEGSKQLP QAIIIGVKKG GTRALLEFLR VHPDVRAVGA EPHFFDRSYH 180
  181 KGLAWYRDLM PRTLEGQITM EKTPSYFVTR EAPARISAMS KDTKLIVVVR DPVTRAISDY 240
  241 TQTLSKRPDI PSFESLTFRN RSAGLIDTSW SAIQIGLYAK HLEPWLRHFP LGQMLFVSGE 300
  301 RLVSDPAGEL RRVQDFLGLK RIITDKHFYF NQTKGFPCLK KAEGSGKPHC LGKTKGRAHP 360
  361 TIAREVLRQL RDFYRPFNRK FYQMTGRDFG WDG

Type	Start	End	Confidence
Signal Peptide	1	43	0.86
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	393	0.99