YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG12_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	32	0.90
Non-Cytoplasmic	33	67	0.96
Transmembrane Helix	68	88	0.94
Cytoplasmic	89	97	0.80
Transmembrane Helix	98	115	0.97
Non-Cytoplasmic	116	122	0.81
Transmembrane Helix	123	142	0.93
Cytoplasmic	143	148	0.76
Transmembrane Helix	149	167	0.91
Non-Cytoplasmic	168	177	0.68
Transmembrane Helix	178	201	0.88
Cytoplasmic	202	212	0.84
Transmembrane Helix	213	233	0.90
Non-Cytoplasmic	234	261	0.92
Transmembrane Helix	262	282	0.91
Cytoplasmic	283	288	0.82
Transmembrane Helix	289	307	0.90
Non-Cytoplasmic	308	312	0.86
Transmembrane Helix	313	333	0.85
Cytoplasmic	334	345	0.78
Transmembrane Helix	346	367	0.66
Non-Cytoplasmic	368	486	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKKSSGKR SWPLLGLLVT VATIHLVICP YTKVEESFNL QATHDLLYHQ LDIDKYDHHE  60
   61 FPGVVPRTFL GPLVIAAFSS PVVYVLSLLE VSKFYSQLIV RGVLGLGVIS GLWTLQKEVR 120
  121 QQFGATVAVM FCWISATQFH LMFYCTRTLP NVLALAVVLP ALTAWLQRRW ALFVWLSAFV 180
  181 IIGFRAELAM LLGIALLLTL YQRRLTVARV LRHAIPAGLL CLGLTVAVDS YFWRYLVWPE 240
  241 GVVLWYNTVL NKSSNWGTSP LLWYFYSALP RGLGCSLLFI PLGAVDRRTY ALALPSLGFV 300
  301 ALYSLLPHKE LRFIIYTFPV LNIMAARGCT YILNKKSWPY KVRAMLVTGH ILVNVAYTAT 360
  361 SLYVSHFNYP GGVAMQQLHE LVPPQTDVLL HIDVAAAQTG VSRFLQVNDD WRYDKSEDVG 420
  421 AAAMLNYTHI LMEAVPGHPA LYRDTHRVLA SIEGTTGISL NLMKLPPFDV NLQTKLVLLE 480
  481 RLLRPA