YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HS3S2_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYRVLGRAG PPQPRRARRL LFAFTLSLSC TYLCYSFLCC CDGLGQSRLL GAPRCLRGPS  60
   61 ASGQKLLAKS RPCDPPGPTP SEPSAPSAPA AAAPAPRLSG SNHSGSPKPG TKRLPQALIV 120
  121 GVKKGGTRAV LEFIRVHPDV RALGTEPHFF DRNYGRGLDW YRSLMPRTLE TQITLEKTPS 180
  181 YFVTQEAPRR IFNMSRDTKL IVVVRNPVTR AISDYTQTLS KKPDIPTFEG LSFRNRSLGL 240
  241 VDVSWNAIRI GMYALHLESW LRYFPLAQIH FVSGERLITD PAGEMGRIQD FLGIKRFITD 300
  301 KHFYFNKTKG FPCLKKPEST LLPRCLGKSK GRTHVQIDPE VIDQLREFYR PYNIKFYETV 360
  361 GQDFRWE

Type	Start	End	Confidence
Signal Peptide	1	36	0.85
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	367	0.99