YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HABP4_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGALGSPVA AAGAAMQETF GCVVANRFHQ LLDDESDPFD ILREAEHRRQ QQLQRKRRDE  60
   61 AAAASGAGHR GGRSPAVASG HRPGAGGRRE SQKERKSLAA SGAQQPDSPG GPQPPGQKRT 120
  121 PRRGEQQGWN DNRGTDVVLE RAERRSYREY RPYETERQAD LPVEKFTDEK PVDRFDRDRP 180
  181 LRGRGGPRGG LRSRGRGGPG NRAFDSFDQR GKRDFERYSS NDKTNRMEDS MGGCGIRPWG 240
  241 SGKDTSDTEP PAPMEETSMM EECQGTLDEE SAAKVPELEV EEENQVQEMT LDEWKNLQEQ 300
  301 TRPKPEFNIR KPESTVPSKA VVIHKSRYRD DMVKEDYEDE SHVFRKAAND ITSQLEINFG 360
  361 NLPRPGRGAR GSTRGGRGRM RRTENYGPRA EVVTQDVAPN PDDPEDFPAL A

Type	Start	End	Confidence
Signal Peptide	1	21	0.83
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	411	0.99