YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S28A2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.99
Transmembrane Helix	77	98	0.92
Non-Cytoplasmic	99	105	0.77
Transmembrane Helix	106	126	0.96
Cytoplasmic	127	146	0.95
Transmembrane Helix	147	167	0.96
Non-Cytoplasmic	168	174	0.87
Transmembrane Helix	175	193	0.94
Cytoplasmic	194	202	0.71
Transmembrane Helix	203	221	0.93
Non-Cytoplasmic	222	236	0.85
Transmembrane Helix	237	255	0.53
Cytoplasmic	256	257	0.40
Transmembrane Helix	258	283	0.81
Non-Cytoplasmic	284	291	0.43
Transmembrane Helix	292	315	0.79
Cytoplasmic	316	334	0.47
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	363	0.45
Transmembrane Helix	364	383	0.62
Cytoplasmic	384	420	0.63
Transmembrane Helix	421	446	0.79
Non-Cytoplasmic	447	528	0.53
Transmembrane Helix	529	552	0.83
Cytoplasmic	553	564	0.62
Transmembrane Helix	565	589	0.84
Non-Cytoplasmic	590	660	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSKGRKSV SQATVENCME NPGLELMEGG NLEQRYTQEE VTQGHSLEDG LGHSSLWSRR  60
   61 IFQPFTKARS FFERHAGLFR KILLGLLCLA YAAYFLAACI LNFQRALALF VITCLVIFIL 120
  121 ACHFLKKFFP KEQLRCLKPL ENTHLNLWAK RVFVGLSVVG LILWLALDTA QRPEQLISFA 180
  181 GICMFILILF ACSKHHSAVC WRTVFWGLGL QFIFGILVIR TEPGFNAFQW LGDQIQIFLA 240
  241 YTVEGSSFVF GDTLVQNVFA FQSLPIIIFF GCVMSILYYL GLVQWVIQKV AWFLQITMGT 300
  301 TAAETLAVAG NIFVGMTEAP LLIRPYLADM TISEIHAVMT GGFATIAGTV LGAFISFGID 360
  361 ASSLISASVM AAPCALALSK LVYPEVEESK FKSKEGLKLP RGEERNILEA ASNGATDAIS 420
  421 LVANVAANLI AFLAVLAFIN ATLSWLGEMV DIHGLSFQVI CSYVLRPMVF MMGVQWADCP 480
  481 LVAEIVGVKF FINEFVAYQQ LSQYKNKRLS GVEEWINGEK QWISVKAEII TTFSLCGFAN 540
  541 LSSIGITLGG LTSMIPQRKS DLCKIVVRAL FTGACVSFIS ACMAGILYVP RGAETDCVSF 600
  601 LNTNFTNRTY ETYVCCRELF QSTSLNGTNM PSFSGPWQDN VSSLRNLASC CDLYTSTVCA 660
  661