YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149064072, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWGTLHTVI GGVNKHSTSI GKVWITVIFI FRVMILVVAA QEVWGDEQED FVCNTLQPGC  60
   61 KNVCYDHFFP VSHIRLWALQ LIFVSTPALL VAMHVAYYRH ETARKFIRGE KRNEFKDLED 120
  121 IKRQKVRIEG SLWWTYTSSI FFRIIFEAAF MYVFYFLYNG YHLPWVLKCG IDPCPNLVDC 180
  181 FISRPTEKTV FTVFMISASV ICMLLNVAEL CYLLLKLCFR RSKRTQAQRN HPNHALKESK 240
  241 QNEMNELISD SGQNAITSFP S

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	41	0.90
Non-Cytoplasmic	42	75	0.97
Transmembrane Helix	76	98	0.94
Cytoplasmic	99	131	0.99
Transmembrane Helix	132	156	0.90
Non-Cytoplasmic	157	192	0.95
Transmembrane Helix	193	215	0.93
Cytoplasmic	216	261	0.98