YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TSHR_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	418	0.99
Transmembrane Helix	419	441	0.92
Cytoplasmic	442	450	0.87
Transmembrane Helix	451	473	0.88
Non-Cytoplasmic	474	496	0.89
Transmembrane Helix	497	517	0.92
Cytoplasmic	518	537	0.87
Transmembrane Helix	538	560	0.91
Non-Cytoplasmic	561	579	0.91
Transmembrane Helix	580	605	0.90
Cytoplasmic	606	625	0.93
Transmembrane Helix	626	647	0.91
Non-Cytoplasmic	648	660	0.88
Transmembrane Helix	661	682	0.73
Cytoplasmic	683	764	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPGSLLLLV LLLALSRSLR GKECASPPCE CHQEDDFRVT CKELHRIPSL PPSTQTLKLI  60
   61 ETHLKTIPSL AFSSLPNISR IYLSIDATLQ RLEPHSFYNL SKMTHIEIRN TRSLTYIDPD 120
  121 ALTELPLLKF LGIFNTGLRI FPDLTKIYST DIFFILEITD NPYMTSVPEN AFQGLCNETL 180
  181 TLKLYNNGFT SVQGHAFNGT KLDAVYLNKN KYLTAIDNDA FGGVYSGPTL LDVSSTSVTA 240
  241 LPSKGLEHLK ELIAKDTWTL KKLPLSLSFL HLTRADLSYP SHCCAFKNQK KIRGILESLM 300
  301 CNESSIRNLR QRKSVNILRG PIYQEYEEDP GDNSVGYKQN SKFQESPSNS HYYVFFEEQE 360
  361 DEVVGFGQEL KNPQEETLQA FESHYDYTVC GDNEDMVCTP KSDEFNPCED IMGYRFLRIV 420
  421 VWFVSLLALL GNIFVLLILL TSHYKLTVPR FLMCNLAFAD FCMGVYLLLI ASVDLYTHSE 480
  481 YYNHAIDWQT GPGCNTAGFF TVFASELSVY TLTVITLERW YAITFAMRLD RKIRLRHAYT 540
  541 IMAGGWVSCF LLALLPMVGI SSYAKVSICL PMDTDTPLAL AYIVLVLLLN VVAFVVVCSC 600
  601 YVKIYITVRN PQYNPRDKDT KIAKRMAVLI FTDFMCMAPI SFYALSALMN KPLITVTNSK 660
  661 ILLVLFYPLN SCANPFLYAI FTKAFQRDVF ILLSKFGICK RQAQAYQGQR VCPNNSTGIQ 720
  721 IQKIPQDTRQ SLPNMQDTYE LLGNSQLAPK LQGQISEEYK QTAL