YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|107922056
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.97
Transmembrane Helix	125	147	0.88
Non-Cytoplasmic	148	163	0.93
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	194	0.83
Transmembrane Helix	195	215	0.87
Non-Cytoplasmic	216	265	0.89
Transmembrane Helix	266	286	0.92
Cytoplasmic	287	345	0.93
Transmembrane Helix	346	366	0.86
Non-Cytoplasmic	367	381	0.88
Transmembrane Helix	382	404	0.93
Cytoplasmic	405	548	0.98
Transmembrane Helix	549	568	0.94
Non-Cytoplasmic	569	610	0.77
Transmembrane Helix	611	631	0.57
Cytoplasmic	632	675	0.77
Transmembrane Helix	676	698	0.88
Non-Cytoplasmic	699	748	0.85
Transmembrane Helix	749	770	0.86
Cytoplasmic	771	924	0.96
Transmembrane Helix	925	944	0.89
Non-Cytoplasmic	945	956	0.85
Transmembrane Helix	957	980	0.79
Cytoplasmic	981	993	0.72
Transmembrane Helix	994	1016	0.80
Non-Cytoplasmic	1017	1048	0.79
Transmembrane Helix	1049	1076	0.71
Cytoplasmic	1077	1122	0.80
Transmembrane Helix	1123	1142	0.57
Non-Cytoplasmic	1143	1168	0.49
Transmembrane Helix	1169	1193	0.88
Cytoplasmic	1194	1243	0.49
Transmembrane Helix	1244	1266	0.84
Non-Cytoplasmic	1267	1273	0.41
Transmembrane Helix	1274	1298	0.79
Cytoplasmic	1299	1307	0.49
Transmembrane Helix	1308	1325	0.42
Non-Cytoplasmic	1326	1383	0.64
Transmembrane Helix	1384	1403	0.93
Cytoplasmic	1404	1477	0.69
Transmembrane Helix	1478	1501	0.88
Non-Cytoplasmic	1502	2165	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNENTRMYV PEENHQGSNY GSPRPAHANM NANAAAGLAP EHIPTPGAAL SWQAAIDAAR  60
   61 QAKLMGSAGN ATISTVSSTQ RKRQQYGKPK KQGGTTATRP PRALLCLTLK NPIRRACISI 120
  121 VEWKPFEIII LLTIFANCVA LAIYIPFPED DSNATNSNLE RVEYLFLIIF TVEAFLKVIA 180
  181 YGLLFHPNAY LRNGWNLLDF IIVVVGLFSA ILEQATKADG ANALGGKGAG FDVKALRAFR 240
  241 VLRPLRLVSG VPSLQVVLNS IIKAMVPLLH IALLVLFVII IYAIIGLELF MGKMHKTCYN 300
  301 QEGIIDVPAE EDPSPCALET GHGRQCQNGT VCKPGWDGPK HGITNFDNFA FAMLTVFQCI 360
  361 TMEGWTDVLY WVNDAVGRDW PWIYFVTLII IGSFFVLNLV LGVLSGEFSK EREKAKARGD 420
  421 FQKLREKQQL EEDLKGYLDW ITQAEDIDPE NEDEGMDEDK PRNRGAPAGL HDQKKGKFAW 480
  481 FSHSTETHVS MPTSETESVN TENVAGGDIE GENCGARLAH RISKSKFSRY WRRWNRFCRR 540
  541 KCRAAVKSNV FYWLVIFLVF LNTLTIASEH YNQPHWLTEV QDTANKALLA LFTAEMLLKM 600
  601 YSLGLQAYFV SLFNRFDCFI VCGGILETIL VETKIMSPLG ISVLRCVRLL RIFKITRYWN 660
  661 SLSNLVASLL NSVRSIASLL LLLFLFIIIF SLLGMQLFGG KFNFDEMQTR RSTFDNFPQS 720
  721 LLTVFQILTG EDWNSVMYDG IMAYGGPSFP GMLVCIYFII LFICGNYILL NVFLAIAVDN 780
  781 LADAESLTSA QKEEEEEKER KKLARTASPE KKQEVMEKPA VEESKEEKIE LKSITADGES 840
  841 PPTTKINMDD LQPSENEDKS PHSNPDTAGE EDEEEPEMPV GPRPRPLSEL HLKEKAVPMP 900
  901 EASAFFIFSP NNRFRLQCHR IVNDTIFTNL ILFFILLSSI SLAAEDPVQH TSFRNHILFY 960
  961 FDIVFTTIFT IEIALKMTAY GAFLHKGSFC RNYFNILDLL VVSVSLISFG IQSSAINVVK1020
 1021 ILRVLRVLRP LRAINRAKGL KHVVQCVFVA IRTIGNIVIV TTLLQFMFAC IGVQLFKGKL1080
 1081 YTCSDSSKQT EAECKGNYIT YKDGEVDHPI IQPRSWENSK FDFDNVLAAM MALFTVSTFE1140
 1141 GWPELLYRSI DSHTEDKGPI YNYRVEISIF FIIYIIIIAF FMMNIFVGFV IVTFQEQGEQ1200
 1201 EYKNCELDKN QRQCVEYALK ARPLRRYIPK NQHQYKVWYV VNSTYFEYLM FVLILLNTIC1260
 1261 LAMQHYGQSC LFKIAMNILN MLFTGLFTVE MILKLIAFKP KHYFCDAWNT FDALIVVGSI1320
 1321 VDIAITEVHP AEHTQCSPSM SAEENSRISI TFFRLFRVMR LVKLLSRGEG IRTLLWTFIK1380
 1381 SFQALPYVAL LIVMLFFIYA VIGMQVFGKI ALNDTTEINR NNNFQTFPQA VLLLFRCATG1440
 1441 EAWQDIMLAC MPGKKCAPES EPSNSTEGET PCGSSFAVFY FISFYMLCAF LIINLFVAVI1500
 1501 MDNFDYLTRD WSILGPHHLD EFKRIWAEYD PEAKGRIKHL DVVTLLRRIQ PPLGFGKLCP1560
 1561 HRVACKRLVS MNMPLNSDGT VMFNATLFAL VRTALRIKTE GNLEQANEEL RAIIKKIWKR1620
 1621 TSMKLLDQVV PPAGDDEVTV GKFYATFLIQ EYFRKFKKRK EQGLVGKPSQ RNALSLQAGL1680
 1681 RTLHDIGPEI RRAISGDLTA EEELDKAMKE AVSAASEDDI FRRAGGLFGN HVSYYQSDSR1740
 1741 SNFPQTFATQ RPLHINKTGN NQADTESPSH EKLVDSTFTP SSYSSTGSNA NINNANNTAL1800
 1801 GRFPHPAGYS STVSTVEGHG PPLSPAVRVQ EAAWKLSSKR CHSRESQGAT VSQDMFPDET1860
 1861 RSSVRLSEEV EYCSEPSLLS TDILSYQDDE NRQLTCLEED KREIQPSPKR SFLRSASLGR1920
 1921 RASFHLECLK RQKDQGGDIS QKTALPLHLV HHQALAVAGL SPLLQRSHSP STFPRPRPTP1980
 1981 PVTPGSRGRP LQPIPTLRLE GAESSEKLNS SFPSIHCSSW SEETTACSGG SSMARRARPV2040
 2041 SLTVPSQAGA PGRQFHGSAS SLVEAVLISE GLGQFAQDPK FIEVTTQELA DACDMTIEEM2100
 2101 ENAADNILSG GAQQSPNGTL LPFVNCRDPG QDRAVVPEDE SCVYALGRGR SEEALPDSRS2160
 2161 YVSNL