YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HA21_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATIGALVLR FFFIAVLMSS QKSWAIKEEH TIIQAEFYLL PDKRGEFMFD FDGDEIFHVD  60
   61 IEKSETIWRL EEFAKFASFE AQGALANIAV DKANLDVMKE RSNNTPDANV APEVTVLSRS 120
  121 PVNLGEPNIL ICFIDKFSPP VVNVTWLRNG RPVTEGVSET VFLPRDDHLF RKFHYLTFLP 180
  181 STDDFYDCEV DHWGLEEPLR KTWEFEEKTL LPETKENVMC ALGLFVGLVG IVVGIILIMK 240
  241 GIKKRNVVER RQGAL

Type	Start	End	Confidence
Signal Peptide	1	25	0.95
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	218	0.99
Transmembrane Helix	219	241	0.92
Cytoplasmic	242	255	0.96