YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65336250
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	117	0.97
Transmembrane Helix	118	140	0.88
Non-Cytoplasmic	141	156	0.93
Transmembrane Helix	157	178	0.92
Cytoplasmic	179	187	0.83
Transmembrane Helix	188	208	0.87
Non-Cytoplasmic	209	258	0.89
Transmembrane Helix	259	279	0.92
Cytoplasmic	280	338	0.93
Transmembrane Helix	339	359	0.86
Non-Cytoplasmic	360	374	0.88
Transmembrane Helix	375	397	0.93
Cytoplasmic	398	541	0.98
Transmembrane Helix	542	561	0.94
Non-Cytoplasmic	562	603	0.77
Transmembrane Helix	604	624	0.57
Cytoplasmic	625	668	0.77
Transmembrane Helix	669	691	0.88
Non-Cytoplasmic	692	741	0.85
Transmembrane Helix	742	763	0.86
Cytoplasmic	764	917	0.96
Transmembrane Helix	918	937	0.89
Non-Cytoplasmic	938	949	0.85
Transmembrane Helix	950	973	0.79
Cytoplasmic	974	986	0.72
Transmembrane Helix	987	1009	0.80
Non-Cytoplasmic	1010	1041	0.79
Transmembrane Helix	1042	1069	0.71
Cytoplasmic	1070	1115	0.80
Transmembrane Helix	1116	1135	0.57
Non-Cytoplasmic	1136	1161	0.49
Transmembrane Helix	1162	1186	0.88
Cytoplasmic	1187	1236	0.49
Transmembrane Helix	1237	1259	0.84
Non-Cytoplasmic	1260	1266	0.41
Transmembrane Helix	1267	1291	0.79
Cytoplasmic	1292	1300	0.49
Transmembrane Helix	1301	1318	0.42
Non-Cytoplasmic	1319	1376	0.64
Transmembrane Helix	1377	1396	0.93
Cytoplasmic	1397	1470	0.69
Transmembrane Helix	1471	1494	0.88
Non-Cytoplasmic	1495	2158	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCCALDCAC SNYGSPRPAH ANMNANAAAG LAPEHIPTPG AALSWQAAID AARQAKLMGS  60
   61 AGNATISTVS STQRKRQQYG KPKKQGGTTA TRPPRALLCL TLKNPIRRAC ISIVEWKPFE 120
  121 IIILLTIFAN CVALAIYIPF PEDDSNATNS NLERVEYLFL IIFTVEAFLK VIAYGLLFHP 180
  181 NAYLRNGWNL LDFIIVVVGL FSAILEQATK ADGANALGGK GAGFDVKALR AFRVLRPLRL 240
  241 VSGVPSLQVV LNSIIKAMVP LLHIALLVLF VIIIYAIIGL ELFMGKMHKT CYNQEGIIDV 300
  301 PAEEDPSPCA LETGHGRQCQ NGTVCKPGWD GPKHGITNFD NFAFAMLTVF QCITMEGWTD 360
  361 VLYWVNDAVG RDWPWIYFVT LIIIGSFFVL NLVLGVLSGE FSKEREKAKA RGDFQKLREK 420
  421 QQLEEDLKGY LDWITQAEDI DPENEDEGMD EDKPRNRGAP AGLHDQKKGK FAWFSHSTET 480
  481 HVSMPTSETE SVNTENVAGG DIEGENCGAR LAHRISKSKF SRYWRRWNRF CRRKCRAAVK 540
  541 SNVFYWLVIF LVFLNTLTIA SEHYNQPHWL TEVQDTANKA LLALFTAEML LKMYSLGLQA 600
  601 YFVSLFNRFD CFIVCGGILE TILVETKIMS PLGISVLRCV RLLRIFKITR YWNSLSNLVA 660
  661 SLLNSVRSIA SLLLLLFLFI IIFSLLGMQL FGGKFNFDEM QTRRSTFDNF PQSLLTVFQI 720
  721 LTGEDWNSVM YDGIMAYGGP SFPGMLVCIY FIILFICGNY ILLNVFLAIA VDNLADAESL 780
  781 TSAQKEEEEE KERKKLARTA SPEKKQEVME KPAVEESKEE KIELKSITAD GESPPTTKIN 840
  841 MDDLQPSENE DKSPHSNPDT AGEEDEEEPE MPVGPRPRPL SELHLKEKAV PMPEASAFFI 900
  901 FSPNNRFRLQ CHRIVNDTIF TNLILFFILL SSISLAAEDP VQHTSFRNHI LFYFDIVFTT 960
  961 IFTIEIALKM TAYGAFLHKG SFCRNYFNIL DLLVVSVSLI SFGIQSSAIN VVKILRVLRV1020
 1021 LRPLRAINRA KGLKHVVQCV FVAIRTIGNI VIVTTLLQFM FACIGVQLFK GKLYTCSDSS1080
 1081 KQTEAECKGN YITYKDGEVD HPIIQPRSWE NSKFDFDNVL AAMMALFTVS TFEGWPELLY1140
 1141 RSIDSHTEDK GPIYNYRVEI SIFFIIYIII IAFFMMNIFV GFVIVTFQEQ GEQEYKNCEL1200
 1201 DKNQRQCVEY ALKARPLRRY IPKNQHQYKV WYVVNSTYFE YLMFVLILLN TICLAMQHYG1260
 1261 QSCLFKIAMN ILNMLFTGLF TVEMILKLIA FKPKHYFCDA WNTFDALIVV GSIVDIAITE1320
 1321 VHPAEHTQCS PSMSAEENSR ISITFFRLFR VMRLVKLLSR GEGIRTLLWT FIKSFQALPY1380
 1381 VALLIVMLFF IYAVIGMQVF GKIALNDTTE INRNNNFQTF PQAVLLLFRC ATGEAWQDIM1440
 1441 LACMPGKKCA PESEPSNSTE GETPCGSSFA VFYFISFYML CAFLIINLFV AVIMDNFDYL1500
 1501 TRDWSILGPH HLDEFKRIWA EYDPEAKGRI KHLDVVTLLR RIQPPLGFGK LCPHRVACKR1560
 1561 LVSMNMPLNS DGTVMFNATL FALVRTALRI KTEGNLEQAN EELRAIIKKI WKRTSMKLLD1620
 1621 QVVPPAGDDE VTVGKFYATF LIQEYFRKFK KRKEQGLVGK PSQRNALSLQ AGLRTLHDIG1680
 1681 PEIRRAISGD LTAEEELDKA MKEAVSAASE DDIFRRAGGL FGNHVSYYQS DSRSNFPQTF1740
 1741 ATQRPLHINK TGNNQADTES PSHEKLVDST FTPSSYSSTG SNANINNANN TALGRFPHPA1800
 1801 GYSSTVSTVE GHGPPLSPAV RVQEAAWKLS SKRCHSRESQ GATVSQDMFP DETRSSVRLS1860
 1861 EEVEYCSEPS LLSTDILSYQ DDENRQLTCL EEDKREIQPS PKRSFLRSAS LGRRASFHLE1920
 1921 CLKRQKDQGG DISQKTALPL HLVHHQALAV AGLSPLLQRS HSPSTFPRPR PTPPVTPGSR1980
 1981 GRPLQPIPTL RLEGAESSEK LNSSFPSIHC SSWSEETTAC SGGSSMARRA RPVSLTVPSQ2040
 2041 AGAPGRQFHG SASSLVEAVL ISEGLGQFAQ DPKFIEVTTQ ELADACDMTI EEMENAADNI2100
 2101 LSGGAQQSPN GTLLPFVNCR DPGQDRAVVP EDESCVYALG RGRSEEALPD SRSYVSNL