YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD53_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMSSLKLLK YVLFIFNLLF WVCGCCILGF GIYFLVQNTY GVLFRNLPFL TLGNILVIVG  60
   61 SIIMVVAFLG CMGSIKENKC LLMSFFVLLL IILLAEVTIA ILLFVYEQKL NTLVAEGLND 120
  121 SIQHYHSDNS TMKAWDFIQT QLQCCGVNGS SDWTSGPPSS CPSGADVQGC YNKAKSWFHS 180
  181 NFLYIGIITI CVCVIQVLGM SFALTLNCQI DKTSQALGL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	35	0.92
Non-Cytoplasmic	36	49	0.89
Transmembrane Helix	50	72	0.91
Cytoplasmic	73	81	0.82
Transmembrane Helix	82	104	0.93
Non-Cytoplasmic	105	183	0.97
Transmembrane Helix	184	206	0.91
Cytoplasmic	207	219	0.93