YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SERC5_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.84
Transmembrane Helix	38	59	0.95
Non-Cytoplasmic	60	90	0.96
Transmembrane Helix	91	111	0.92
Cytoplasmic	112	126	0.83
Transmembrane Helix	127	146	0.95
Non-Cytoplasmic	147	156	0.81
Transmembrane Helix	157	178	0.90
Cytoplasmic	179	194	0.94
Transmembrane Helix	195	219	0.89
Non-Cytoplasmic	220	232	0.85
Transmembrane Helix	233	253	0.92
Cytoplasmic	254	260	0.87
Transmembrane Helix	261	280	0.71
Non-Cytoplasmic	281	312	0.75
Transmembrane Helix	313	335	0.79
Cytoplasmic	336	392	0.84
Transmembrane Helix	393	413	0.92
Non-Cytoplasmic	414	428	0.77
Transmembrane Helix	429	450	0.86
Cytoplasmic	451	461	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARCCAGQL ACCCGSAGCS LCCGCCPKFR QSRTTRFMYL FYFILVIALC CVMMTPSVMK  60
   61 QVKDHIPFFE EFCKKTQAGG DACENLVGYS AVYRVCFGMA CFFALFCLLT LKVNNSKSCR 120
  121 AYIHNGFWFF KLLLLGAMCS GAFFIPDQET FLKVWRYVGA GGSFLFICIQ LLLIVQFAHK 180
  181 WNKNWTAGTV RNKLWYASLS LVTLIMYSVA VGGLALMAVF YTQWDDCMDN KILLGVHGGL 240
  241 CVLISLVAIS PCVQNRQPHS GLLQSGLISC YVTYLTFSAL TSKPEKKVLD EHGKNVTICA 300
  301 PDFGQDLHRD ENMVTWLGTL LLIVCISYSC LTSTTRSSSD ALQSRYGAPE LEVARCCFCF 360
  361 GPDGEDTEEQ QNVKKGPRVI YDEKKGTVYS YSYFHFVFFL ASLYVMMTLT SWFHYENATI 420
  421 KTFFSGWSVF WVKMASCWMC VLLYLQTLVA PLCCPSRQFS V