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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DSC1_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVACAAPGS TFSKQLLFFL LVLVLFCDAC QKVSLHVPSH LKAETPVGKV NLEECLKSPS  60
   61 LILSSDPAFR ILEDGTIYTT HDLLLSSEKR GFSILLSDGQ GQEQKKLEVV LSAREKKVFR 120
  121 KRHTKEPVHN RSKRRWAPIP CSLMENSLGP FPQHIQQIQS DAAQNYTIFY SISGPGDDKE 180
  181 PYNLFYIEKD TGDIYCTRSI DREQYDQFLV YGYATTADGY APDYPLPLLF KVEDDNDNAP 240
  241 YFETKLTVFS VPENCRSGTS VGQVTAIDKD EPGTLHTRLK YKILQQIPDQ PKHFSIHPDT 300
  301 GVITTTTPLL DREKCDTYKL VMEVRDMGGQ PFGLFTTGTI TISLEDENDN SPYFTQTSYT 360
  361 TEVEENRIDV EILRMVVHDQ DLPNTPHSKA VYTILKGNEN GNFKITTDPN TNEGVLCVVK 420
  421 PLNYEVSRQV TLQIGVLNEA QFTNAANAQP PTMCTTTVTV KIKDRDEGPE CQPPVKVIQS 480
  481 KDGLPAGQEL LGYKAVDPET SSGEGLRYEM VGDEDNWFEI NKITGDLRTV KVLDRESKFV 540
  541 KNNQYNISVV ATDTAGRSCT GTLVVLLEDF NDHPPQIDKE VTICQQEKDF AVLEPIDLDG 600
  601 PDNGPPFQFL LDNSSSKLWT LESQDGKRAI LRQRHNLNYN YYSVPIQIQD RHGFSAKHVL 660
  661 SVRVCDCTTP TECRMAVKEE RDAKPNIILG KWAILAMVLG SALLLCILFT CFCVTTTKRT 720
  721 VKKCFPDDVA QQNLIVSNTE GPGEEVTEAN IRLPTQTANI CDTSMSVGTL GGQGIKTQQS 780
  781 FEMVKGGHTL ESHKGGVLGA AEPGRYAYTD WQTFTQPRLG EKVYLCGQAE EHKHCEDYVR 840
  841 PYNYEGKGSM AGSVGCCSDR QEEEGLEFLD QLEPKFRTLA KTCVKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle