YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMCO3_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.89
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	284	0.88
Transmembrane Helix	285	307	0.68
Cytoplasmic	308	349	0.45
Transmembrane Helix	350	372	0.87
Non-Cytoplasmic	373	379	0.66
Transmembrane Helix	380	400	0.79
Cytoplasmic	401	421	0.74
Transmembrane Helix	422	444	0.74
Non-Cytoplasmic	445	456	0.71
Transmembrane Helix	457	482	0.85
Cytoplasmic	483	498	0.82
Transmembrane Helix	499	516	0.86
Non-Cytoplasmic	517	521	0.56
Transmembrane Helix	522	541	0.69
Cytoplasmic	542	554	0.63
Transmembrane Helix	555	574	0.91
Non-Cytoplasmic	575	579	0.65
Transmembrane Helix	580	603	0.90
Cytoplasmic	604	609	0.73
Transmembrane Helix	610	630	0.70
Non-Cytoplasmic	631	641	0.56
Transmembrane Helix	642	665	0.88
Cytoplasmic	666	678	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLDQSLLW MLLPFFHLIA SAAEHEEVAK HAIKLHRGKG ATATQRKQWA LDSCRRLTGL  60
   61 LRQKNVVLNK LKNAIRAVEK DTSLSGEEKL FQVHTFEIFQ KELNESENSI FQAIYGLQRA 120
  121 LQGDYRDVVN MKESSKQRLE ALREAAIKEE TEYVELLAAE KHQVEALKNM QHQNKSLSML 180
  181 DEILEDVRKA ADRLEEEIEE HAFDDNKSVK GVNFEAVLRV EEEEASSKQN MTKREVEDGL 240
  241 GLSMLIDSQN NQYILTKPRD STIPRADHHF IKDIVTIGML SLPCGWLCTA IGLPTMFGYI 300
  301 ICGVLLGPSG LNSIKSIVQV ETLGEFGVFF TLFLVGLEFS PEKLRKVWRI SLQGPCYMTL 360
  361 LMIAFGLWWG HLLRIRPTQS VFISTCLSLS STPLVSRFLV GSARGDKEAG DIDYSTVLLG 420
  421 MLVMQDVQLG LFIAVMPTLI QAGAGASSSV VMEVLRILFL IGQILFSLAA VFLLCLVMKT 480
  481 YLIGPYYRKL HLESKGNKEI LVLGVSAFTF LMLTVTELLD VSMELGCFLA GALVSSQGHM 540
  541 VTEEIMTYIE PIRDFLAIIF FASIGLHVFP TFVIYELTVL VFLTLSVVIM KFVLAVLVLS 600
  601 LILPRSSQYI KWIVSAGLAQ VSEFSFVLGS RARRAGILSR EVYLLILSVT TLSLLLAPVL 660
  661 WKAAITKCVP RPERRSSL