YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IPSP_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFFPILCLV LFISHGVASR RHSHSKKKKA KESSVGAVGP PSSKDFAFRL YRALASESPG  60
   61 QNVFFSPLSV SMSLGMLSLG AGLKTKTQIL DGLGLSLQQG QEDKLHKGFQ QLLQRFRQPS 120
  121 DGLQLSLGSA LFKDPAVHIR DDFLSAMKTL YMSDTFSTNF GNPEIAKKQI NNYVAKQTKG 180
  181 KIVDLIKDLD STHVMIVVNY IFFKAKWQTA FSETNTHKMD FHVTPKKTIR VPMMNREDEY 240
  241 SYYLDQNISC TVVGIPYQGN AIALFILPSE GKMKQVEDGL DERTLRNWLK MFTKRRLDLY 300
  301 LPKFSIEATY KLENVLPKLG IQDVFTTHAD LSGITDHTNI KLSEMVHKSM MEVEESGTTA 360
  361 AAITGAIFTF RSARPSSLKI EFTRPFLLTL MEDSHILFVG KVTRP

Type	Start	End	Confidence
Signal Peptide	1	19	0.97
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	405	0.99