YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BEST2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVTYTARVA NARFGGFSQL LLLWRGSIYK LLWRELLCFL GLYMALSAAY RFLLAEEQKR  60
   61 YFEKLVIYCD QYASLIPVSF VLGFYVTLVV HRWWNQYLCM PLPDALMCIV AGTVHGRDDR 120
  121 GRLYRRTLMR YAGLSAVLIL RSVSTAVFKR FPTIDHVVEA GFMTREERKK FENLNSSYNK 180
  181 YWVPCVWFSS LAAQARREGR IRDNSALKLL LEELNVFRSK CGMLFHYDWI SIPLVYTQVV 240
  241 TIAVYSYFLA CLIGRQFLDP AQGYKDHTLD LCVPIFTLLQ FFFYAGWLKV AEQLINPFGE 300
  301 DDDDFETNFL IDRNFQVSML AVDEMYDDLA MLEKDLYWDA AEARAPYTAA TAFLLQQPSF 360
  361 QGSTFDIALA KEDMQFQRLD GVDGPLGEVH GDFLQRLLPA GAGSVGPLGR RLSLLRRKNS 420
  421 CVSEASTAAS CGCAGAADGG GVECGCGDPL LDPSLREPEL EPPACPEPPA PIPGPTPEPF 480
  481 TTVSIPGPRA PAPPWLPSPI GEEEESPA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.65
Transmembrane Helix	9	28	0.51
Non-Cytoplasmic	29	31	0.70
Transmembrane Helix	32	54	0.87
Cytoplasmic	55	67	0.77
Transmembrane Helix	68	89	0.85
Non-Cytoplasmic	90	96	0.63
Transmembrane Helix	97	116	0.79
Cytoplasmic	117	126	0.91
Transmembrane Helix	127	148	0.80
Non-Cytoplasmic	149	231	0.89
Transmembrane Helix	232	254	0.81
Cytoplasmic	255	267	0.75
Transmembrane Helix	268	288	0.79
Non-Cytoplasmic	289	508	0.87