YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO4C1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.89
Transmembrane Helix	103	126	0.78
Non-Cytoplasmic	127	138	0.83
Transmembrane Helix	139	161	0.82
Cytoplasmic	162	169	0.88
Transmembrane Helix	170	191	0.95
Non-Cytoplasmic	192	223	0.96
Transmembrane Helix	224	248	0.85
Cytoplasmic	249	259	0.89
Transmembrane Helix	260	284	0.84
Non-Cytoplasmic	285	305	0.93
Transmembrane Helix	306	330	0.84
Cytoplasmic	331	381	0.96
Transmembrane Helix	382	404	0.90
Non-Cytoplasmic	405	417	0.88
Transmembrane Helix	418	442	0.87
Cytoplasmic	443	452	0.89
Transmembrane Helix	453	473	0.92
Non-Cytoplasmic	474	578	0.95
Transmembrane Helix	579	601	0.89
Cytoplasmic	602	616	0.77
Transmembrane Helix	617	636	0.90
Non-Cytoplasmic	637	664	0.82
Transmembrane Helix	665	685	0.89
Cytoplasmic	686	722	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGSKGIENP AFVPSSPGTP RRASASPSQV EVSAVASRNQ NGGSQPRESE EPQKSTEPSP  60
   61 PSSNPPASDE PPGSQLSELE EGPCGWRGFH PQCLQRCNTP QGFLLHYCLL ALTQGIVVNG 120
  121 LVNISISTIE KRYEMKSSLT GLISSSYDIS FCVLSLFVSF FGERGHKPRW LAFASFMIGL 180
  181 GALVFSLPHF FSGRYELGSI FEDTCLTRNS TRCSSSTSLL SNYFYVFVLG QLLLGTGGTP 240
  241 LYTLGTAFID DSVPTHKSSL YIGIGYSMSI LGPAIGYVLG GQLLTMYIDI AMGQSSDLTE 300
  301 DDPRWLGAWW IGFLLAWLFA WSLIMPFSCF PKHLPGTAKI QAGKTSQTHQ NNSTSFQHTD 360
  361 ENFGKSIKDF PTAVKNLMRN TVFICLVLST TSEALITTGF ATFLPKFIEN QFGLTSSFAA 420
  421 TLGGAVLIPG AALGQILGGV LVSKFKMKCK NTMKFALCTS GVALVLSFVF IYAKCENEPF 480
  481 AGVSESYNGT GEMGNLTAPC NANCNCLRSY YYPLCGSDGI QYFSPCFAGC LNSVSNRKPK 540
  541 VYYNCSCIER KITSTAESTD FEAKAGKCRT RCSNLPIFLG IFFITVIFTF MAGTPITVSI 600
  601 LRCVNHRHRS LALGVQFMLL RLLGTIPGPI IFGVIIDSTC VLWDVNECGI KGACWIYDNI 660
  661 KMAHMLVAIS VTCKVITIFF NGLAIVLYKP PPPGTEVSFQ SQNVIVSTIS VEEDLDKAEN 720
  721 EG