YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHPL2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCHVIVTCRS MLWTLLSIVV AFAELVAFMS ADWLIGKAKT RSGSGDEQAG MNSEPHYLGI  60
   61 LCIRTPAMQQ VSRDTLCGTY AKSFGEIASG FWQATAIFLA VGIFILCVVA LVSVFTMCVQ 120
  121 SIMRKSIFNV CGLLQGIAGL FLILGLILYP AGWGCQKAID CGRYASPYKP GDCSLGWAFY 180
  181 TATGGTVLTF ICAVFSAQAE IATSSDKVQE EIEEGKNLVC LL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	31	0.89
Non-Cytoplasmic	32	93	0.95
Transmembrane Helix	94	118	0.90
Cytoplasmic	119	126	0.88
Transmembrane Helix	127	149	0.90
Non-Cytoplasmic	150	175	0.93
Transmembrane Helix	176	197	0.91
Cytoplasmic	198	222	0.95