YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VGLU3_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.97
Transmembrane Helix	91	114	0.80
Non-Cytoplasmic	115	141	0.92
Transmembrane Helix	142	163	0.82
Cytoplasmic	164	171	0.70
Transmembrane Helix	172	191	0.86
Non-Cytoplasmic	192	200	0.59
Transmembrane Helix	201	220	0.77
Cytoplasmic	221	231	0.85
Transmembrane Helix	232	253	0.87
Non-Cytoplasmic	254	260	0.61
Transmembrane Helix	261	280	0.90
Cytoplasmic	281	322	0.96
Transmembrane Helix	323	345	0.86
Non-Cytoplasmic	346	364	0.79
Transmembrane Helix	365	387	0.84
Cytoplasmic	388	403	0.84
Transmembrane Helix	404	422	0.80
Non-Cytoplasmic	423	427	0.64
Transmembrane Helix	428	450	0.87
Cytoplasmic	451	460	0.66
Transmembrane Helix	461	484	0.88
Non-Cytoplasmic	485	495	0.67
Transmembrane Helix	496	515	0.89
Cytoplasmic	516	601	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFKAFDTFK EKILKPGKEG VKNAVGDSLG ILQRKIDGTN EEEDAIELNE EGRPVQTSRA  60
   61 HRPVCDCSCC GIPKRYICDC SCCGIPKRYI IAVMSGLGFC ISFGIRCNLG VAIVEMVNNS 120
  121 TVYVDGKPEI QTAQFNWDPE TVGLIHGSFF WGYIVTQIPG GFISNKFAAS RVFGAAIFLT 180
  181 STLNMFIPSA ARVHYGCVMG VRILQGLVEG VTYPACHGMW SKWAPPLERS RLATTSFCGS 240
  241 YAGAVVAMPL AGVLVQYIGW ASVFYIYGMF GIIWYMFWLL QAYECPAAHP TISNAERTYI 300
  301 ETSIGEGANL ASLSKFNTPW RRFFTSLPVY AIIVANFCRS WTFYLLLISQ PAYFEEVFGF 360
  361 AISKVGLLSA VPHMVMTIVV PIGGQLADYL RSRKILTTTA VRKIMNCGGF GMEATLLLVV 420
  421 GFSHTKGVAI SFLVLAVGFS GFAISGFNVN HLDIAPRYAS ILMGISNGVG TLSGMVCPLI 480
  481 VGAMTKHKTR EEWQNVFLIA ALVHYSGVIF YGVFASGEKQ DWADPENLSE DKCGIIDQDE 540
  541 LAEETELNHE TFVSPRKKMS YGATTQNCEV QKTEWRQQRE SAFDGEEPLS YQAEGDFSET 600
  601 S