YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NTR2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSSLWPPR PSPSAGLSLE ARLGVDTRLW AKVLFTALYS LIFALGTAGN ALSVHVVLKA  60
   61 RTGRPGRLRY HVLSLALSAL LLLLISVPME LYNFVWSHYP WVFGDLGCRG YYFVRELCAY 120
  121 ATVLSVASLS AERCLAVCQP LRARRLLTPR RTCRLLSLVW VASLGLALPM AVIMGQKHEM 180
  181 ERADGEPEPA SRVCTVLVSR ASSRSTFQVK RAGLLRSPLW ELTAILNGIT VNHLVALYSQ 240
  241 VPSASAQVNS IPSRLELLSE EGLLGFITWR KTLSLGVQAS LVRHKDASQI RSLQHSAQVL 300
  301 RAIVAVYVIC WLPYHARRLM YCYIPDDGWT DELYDFYHYF YMVTNTLFYV SSAVTPVLYN 360
  361 AVSSSFRKLF LESLSSLCGE QRSVVPLPQE APESTTSTYS FRLWGSPRNP SLGEIQV

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.91
Transmembrane Helix	35	58	0.86
Cytoplasmic	59	69	0.90
Transmembrane Helix	70	92	0.89
Non-Cytoplasmic	93	116	0.82
Transmembrane Helix	117	136	0.78
Cytoplasmic	137	151	0.86
Transmembrane Helix	152	174	0.87
Non-Cytoplasmic	175	221	0.83
Transmembrane Helix	222	241	0.49
Cytoplasmic	242	296	0.64
Transmembrane Helix	297	316	0.70
Non-Cytoplasmic	317	337	0.87
Transmembrane Helix	338	359	0.69
Cytoplasmic	360	417	0.75