YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POMT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.94
Transmembrane Helix	54	74	0.92
Non-Cytoplasmic	75	108	0.89
Transmembrane Helix	109	129	0.74
Cytoplasmic	130	140	0.78
Transmembrane Helix	141	164	0.85
Non-Cytoplasmic	165	191	0.64
Transmembrane Helix	192	213	0.82
Cytoplasmic	214	224	0.74
Transmembrane Helix	225	251	0.83
Non-Cytoplasmic	252	257	0.54
Transmembrane Helix	258	276	0.53
Cytoplasmic	277	282	0.46
Transmembrane Helix	283	305	0.86
Non-Cytoplasmic	306	335	0.55
Transmembrane Helix	336	350	0.25
Cytoplasmic	351	473	0.68
Transmembrane Helix	474	492	0.62
Non-Cytoplasmic	493	596	0.96
Transmembrane Helix	597	619	0.91
Cytoplasmic	620	634	0.81
Transmembrane Helix	635	654	0.87
Non-Cytoplasmic	655	663	0.75
Transmembrane Helix	664	685	0.87
Cytoplasmic	686	699	0.77
Transmembrane Helix	700	721	0.89
Non-Cytoplasmic	722	750	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPATGGGLA ESELRPRRGR CGPQAARAAG RDVAAEAVAR SPKRPAWGSR RFEAVGWWAL  60
   61 LALVTLLSFA TRFHRLDEPP HICWDETHFG KMGSYYINRT FFFDVHPPLG KMLIGLAGYL 120
  121 SGYDGTFLFQ KPGDKYEHHS YMGMRGFCAF LGSWLVPFAY LTVLDLSKSL SAALLTAALL 180
  181 TFDTGCLTLS QYILLDPILM FFIMAAMLSM VKYNSCADRP FSAPWWFWLS LTGVSLAGAL 240
  241 GVKFVGLFII LQVGLNTIAD LWYLFGDLSL SLVTVGKHLT ARVLCLIVLP LALYTATFAV 300
  301 HFMVLSKSGP GDGFFSSAFQ ARLSGNNLHN ASIPEHLAYG SVITVKNLRM AIGYLHSHRH 360
  361 LYPEGIGARQ QQVTTYLHKD YNNLWIIKKH NTNSDPLDPS FPVEFVRHGD IIRLEHKETS 420
  421 RNLHSHYHEA PMTRKHYQVT GYGINGTGDS NDFWRIEVVN RKFGNRIKVL RSRIRFIHLV 480
  481 TGCVLGSSGK VLPKWGWEQL EVTCTPYLKE TLNSIWNVED HINPKLPNIS LDVLQPSFPE 540
  541 ILLESHMVMI RGNSGLKPKD NEFTSKPWHW PINYQGLRFS GVNDTDFRVY LLGNPVVWWL 600
  601 NLLSIALYLL SGSIIAVAMQ RGARLPAEVA GLSQVLLRGG GQVLLGWTLH YFPFFLMGRV 660
  661 LYFHHYFPAM LFSSMLTGIL WDTLLRLCAW GLASWPLARG IHVAGILSLL LGTAYSFYLF 720
  721 HPLAYGMVGP LAQDPQSPMA GLRWLDSWDF