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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5668903
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIMKLSTE QLSKEPVISW LATFCMVSII ISAYYLYSGY KQENELSETA SEVDCGDLQH  60
   61 LPYQLMEVKA MKLFDASRTD PTVLVFVESQ YSSLGQDIIM ILESSRFQYH IEIAPGKGDL 120
  121 PVLIDKMKGK YILIIYENIL KYINMDSWNR SLLDKYCVEY GVGVIGFHKT SEKSVQSFQL 180
  181 KGFPFSIYGN LAVKDCCINP HSPLIRVTKS SKLEKGSLPG TDWTVFQINH SAYQPVIFAK 240
  241 VKTPENLSPS ISKGAFYATI IHDLGLHDGI QRVLFGNNLN FWLHKLIFID AISFLSGKRL 300
  301 TLSLDRYILV DIDDIFVGKE GTRMNTNDVK ALLDTQNLLR AQITNFTFNL GFSGKFYHTG 360
  361 TEEEDEGDDC LLGSVDEFWW FPHMWSHMQP HLFHNESSLV EQMILNKKFA LEHGIPTDMG 420
  421 YAVAPHHSGV YPVHVQLYEA WKKVWNIKIT STEEYPHLKP ARYRRGFIHK NIMVLPRQTC 480
  481 GLFTHTIFYK EYPGGPKELD KSIQGGELFF TVVLNPISIF MTHLSNYGND RLGLYTFVNL 540
  541 ANFVKSWTNL RLQTLPPVQL AHKYFELFPD QKDPLWQNPC DDKRHRDIWS KEKTCDRLPK 600
  601 FLVIGPQKTG TTALYLFLVM HPSILSNSPS PKTFEEVQFF NRNNYHRGID WYMDFFPVPS 660
  661 NVTTDFLFEK SANYFHSEEA PKRAASLVPK AKIITILIDP SDRAYSWYQH QRSHEDPAAL 720
  721 KFSFYEVISA GPRAPSELRA LQKRCLVPGW YASHIERWLV YFPPFQLLII DGQQLRTDPA 780
  781 TVMDEVQKFL GVLPHYNYSE ALTFDSHKGF WCQLLEEGKT KCLGKSKGRK YPPMDSDSRT 840
  841 FLSSYYRDHN VELSKLLHKL GQPLPSWLRQ ELQKVR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle